SRR2936284.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936284.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310608
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	1407	0.452982537474888	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	1190	0.383119559058363	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	1058	0.34062226343172103	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	352	0.11332612167104517	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	337	0.10849688353165406	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	336	0.1081749343223613	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	335	0.10785298511306857	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	315	0.10141400092721373	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	20	7.025329E-4	45.000004	3
CTATAGC	20	7.025329E-4	45.000004	27
CGCATGG	20	7.025329E-4	45.000004	2
CACGCGA	20	7.025329E-4	45.000004	23
AGTGGTC	20	7.025329E-4	45.000004	33
TACGGTT	30	2.1603682E-6	45.000004	33
TGCGGGT	45	3.8198777E-10	45.000004	4
CCGCTCG	20	7.025329E-4	45.000004	19
ACGGGTC	30	2.1603682E-6	45.000004	5
TGGCCGT	20	7.025329E-4	45.000004	41
TATTGCG	20	7.025329E-4	45.000004	1
GCCGACC	20	7.025329E-4	45.000004	14
TCAGACG	20	7.025329E-4	45.000004	22
GAACGCC	20	7.025329E-4	45.000004	18
TGCTACG	20	7.025329E-4	45.000004	1
GATTCGC	20	7.025329E-4	45.000004	10
CGCCGAC	20	7.025329E-4	45.000004	13
CAATCGC	20	7.025329E-4	45.000004	37
TGTAACG	20	7.025329E-4	45.000004	1
ATCGCTC	20	7.025329E-4	45.000004	39