SRR2936281.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936281.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413910
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	528	0.12756396318040153	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	521	0.12587277427460075	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	499	0.12055760914208404	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	485	0.11717523133048247	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.028049E-4	45.000004	25
CTTAACG	20	7.028049E-4	45.000004	12
CTCACGA	20	7.028049E-4	45.000004	24
GATCGCC	20	7.028049E-4	45.000004	20
CGCATCG	20	7.028049E-4	45.000004	21
TAACGTT	20	7.028049E-4	45.000004	14
CGCTGAT	20	7.028049E-4	45.000004	43
GTCCGTT	30	2.1621217E-6	45.000004	9
ACCCGTC	20	7.028049E-4	45.000004	36
CGCCGTA	20	7.028049E-4	45.000004	35
AATGTCG	20	7.028049E-4	45.000004	27
ACAACGG	25	3.886465E-5	45.0	2
CGACATA	25	3.886465E-5	45.0	8
GCCGATG	50	1.0786607E-9	40.5	9
TCGACAC	45	1.9232175E-8	40.0	34
ACGGGAG	245	0.0	39.489796	5
AAGCACG	40	3.4510776E-7	39.375004	1
TACGGGA	195	0.0	39.23077	4
TCACGGG	70	0.0	38.57143	3
ACGTACG	35	6.2386043E-6	38.57143	1