SRR2936280.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936280.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	437376
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1011	0.23115122914837577	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	667	0.15250036581796897	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC	499	0.11408947907521216	RNA PCR Primer, Index 36 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC	458	0.10471539362013461	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGC	60	0.0	45.000004	4
GATCGTA	20	7.028489E-4	45.0	21
TAAACGG	20	7.028489E-4	45.0	2
CCGTGAC	20	7.028489E-4	45.0	41
TACGCAA	20	7.028489E-4	45.0	1
AACGCCC	25	3.886829E-5	45.0	25
CACACGG	40	6.7975634E-9	45.0	2
TGTCGAT	25	3.886829E-5	45.0	32
TCGATCA	50	1.0786607E-9	40.5	17
CGGGCAT	50	1.0786607E-9	40.5	6
CGAATAT	215	0.0	39.76744	14
ATAGCGG	80	0.0	39.375	2
AGACCTA	185	0.0	38.91892	32
TTGTGCG	35	6.2394174E-6	38.571426	1
TACGGGA	215	0.0	37.67442	4
CCCTCAT	30	1.1387657E-4	37.500004	30
ATTACGG	30	1.1387657E-4	37.500004	2
CGACAAT	30	1.1387657E-4	37.500004	20
AAACGCC	30	1.1387657E-4	37.500004	24
TACTGCG	30	1.1387657E-4	37.500004	1