SRR2936279.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936279.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	620258
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCG	4725	0.7617797755127705	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTC	3635	0.5860464516378668	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGC	3320	0.5352611332703489	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2474	0.39886627822615756	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTT	1273	0.20523717549793796	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCG	1072	0.17283130568247407	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCT	948	0.15283962480129235	No Hit
GAATATGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTC	876	0.14123155203157398	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	801	0.1291398095631173	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCT	797	0.12849491663146625	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTC	651	0.10495632462620393	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCG	632	0.10189308320086157	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCC	20	7.0307724E-4	45.0	12
CGTTAGC	20	7.0307724E-4	45.0	37
TATTACG	20	7.0307724E-4	45.0	1
ACTCGCA	20	7.0307724E-4	45.0	11
ATGCGAA	25	3.8887225E-5	45.0	14
CGTTATT	215	0.0	41.860466	1
CGTTTTT	1005	0.0	41.19403	1
CGTTTTA	115	0.0	41.08696	1
CAAACGG	55	6.002665E-11	40.909092	2
TACGGCT	550	0.0	40.909092	7
GCGATAC	50	1.0804797E-9	40.5	9
AACGGCT	130	0.0	39.80769	7
TAATACG	85	0.0	39.705883	4
TGATACC	890	0.0	39.69101	4
ATAGCGG	40	3.4547884E-7	39.375	2
TCGACGG	40	3.4547884E-7	39.375	2
AAACGGC	155	0.0	39.193546	6
ACGGCTG	720	0.0	38.125004	8
GATACCT	935	0.0	38.02139	5
GACACGA	95	0.0	37.894737	25