SRR2936274.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936274.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	483639
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG	2638	0.5454481545119397	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC	2169	0.4484749989144796	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC	1974	0.40815566982811563	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	663	0.1370857188936376	TruSeq Adapter, Index 16 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	659	0.13625865573289167	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT	589	0.12178505041983793	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG	542	0.11206705828107329	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	523	0.10813850826753013	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	509	0.10524378720491938	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	501	0.10358966088342753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCATAC	20	7.0292305E-4	45.0	38
CGAAATA	20	7.0292305E-4	45.0	16
CGCATGG	35	1.2099736E-7	45.0	2
CACGCGC	20	7.0292305E-4	45.0	16
CGACATA	20	7.0292305E-4	45.0	17
CGCGAAG	20	7.0292305E-4	45.0	2
TATAGCG	20	7.0292305E-4	45.0	1
ATGCGCG	20	7.0292305E-4	45.0	11
CGAGATA	40	6.8012014E-9	45.0	19
CCACGCG	20	7.0292305E-4	45.0	1
AATCGCG	25	3.887443E-5	45.0	1
CGAAGCA	20	7.0292305E-4	45.0	31
TACGGCT	310	0.0	43.54839	7
ATAGCGG	55	6.002665E-11	40.909092	2
TATGGGA	300	0.0	40.5	4
TTACGGG	170	0.0	39.705883	3
TATGGGT	165	0.0	39.545452	4
TCACCGG	35	6.2407853E-6	38.571426	2
CTCTGCG	35	6.2407853E-6	38.571426	23
CGGGCAA	65	9.094947E-12	38.07692	6