SRR2936273.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936273.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	485336
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCG	843	0.17369410058186494	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	771	0.15885901725814694	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	768	0.15824088878632533	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGC	691	0.1423755913429047	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	667	0.13743056356833203	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	583	0.1201229663573277	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	566	0.11662023835033873	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	509	0.10487579738572865	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	30	2.1629003E-6	45.000004	2
CGACGGA	20	7.0292526E-4	45.000004	28
CCAATCC	20	7.0292526E-4	45.000004	16
CGTTCGC	20	7.0292526E-4	45.000004	45
TAGTTCG	20	7.0292526E-4	45.000004	15
GTAGACG	30	2.1629003E-6	45.000004	1
ACCCGCC	20	7.0292526E-4	45.000004	37
CGGTAGT	20	7.0292526E-4	45.000004	12
TCGACGG	35	1.2099918E-7	45.000004	2
TAGCACG	25	3.8874627E-5	45.0	1
GCGATAT	25	3.8874627E-5	45.0	9
ACGGGTA	60	3.6379788E-12	41.250004	5
TACGGGC	55	6.002665E-11	40.909092	4
AGGCGAT	140	0.0	40.178574	7
CGGGCTT	40	3.4527147E-7	39.375004	6
TAACGGG	155	0.0	39.193546	3
AACGGGT	75	0.0	39.0	4
CTTAACG	35	6.240829E-6	38.57143	1
TATGCGG	35	6.240829E-6	38.57143	2
ACGGGCT	70	0.0	38.57143	5