##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936271.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 368574 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71140937776403 31.0 31.0 34.0 30.0 34.0 2 31.859743226597644 31.0 31.0 34.0 30.0 34.0 3 31.823370612143016 31.0 31.0 34.0 30.0 34.0 4 35.553169784086776 37.0 35.0 37.0 33.0 37.0 5 30.98834155420621 37.0 35.0 37.0 0.0 37.0 6 33.236967338987554 37.0 35.0 37.0 17.0 37.0 7 29.604836477885037 35.0 32.0 37.0 0.0 37.0 8 32.57899906124686 35.0 33.0 37.0 17.0 37.0 9 36.328848480902074 39.0 35.0 39.0 32.0 39.0 10 36.63305062212744 38.0 35.0 39.0 32.0 39.0 11 36.76816595853207 39.0 35.0 39.0 33.0 39.0 12 36.787947603466336 39.0 35.0 39.0 33.0 39.0 13 36.54207838860039 39.0 35.0 39.0 32.0 39.0 14 37.72688252562579 39.0 37.0 41.0 33.0 41.0 15 37.843309620320476 40.0 36.0 41.0 33.0 41.0 16 37.90703630749863 40.0 36.0 41.0 33.0 41.0 17 37.8776663573665 40.0 36.0 41.0 33.0 41.0 18 37.78697900557283 39.0 36.0 41.0 33.0 41.0 19 37.72974490875645 39.0 36.0 41.0 33.0 41.0 20 37.68540917156392 39.0 36.0 41.0 33.0 41.0 21 37.60890621693337 39.0 36.0 41.0 33.0 41.0 22 37.59277377134578 39.0 36.0 41.0 33.0 41.0 23 37.56998051951575 39.0 36.0 41.0 33.0 41.0 24 37.50030387384894 39.0 36.0 41.0 32.0 41.0 25 37.39406197941255 39.0 36.0 41.0 32.0 41.0 26 37.21427176089469 39.0 35.0 41.0 32.0 41.0 27 37.152213666726354 39.0 35.0 41.0 32.0 41.0 28 37.05682983607091 39.0 35.0 41.0 31.0 41.0 29 37.0645026507567 39.0 35.0 41.0 31.0 41.0 30 36.94644494728331 39.0 35.0 40.0 31.0 41.0 31 36.80400408059169 39.0 35.0 40.0 31.0 41.0 32 36.746392854623494 39.0 35.0 40.0 31.0 41.0 33 36.617550342672025 39.0 35.0 40.0 30.0 41.0 34 36.502037582683535 39.0 35.0 40.0 30.0 41.0 35 36.441428315616406 39.0 35.0 40.0 30.0 41.0 36 36.31016566551086 39.0 35.0 40.0 30.0 41.0 37 36.20686483582673 39.0 35.0 40.0 30.0 41.0 38 36.14456527047486 38.0 35.0 40.0 30.0 41.0 39 36.130166533721855 38.0 35.0 40.0 30.0 41.0 40 35.994912826189584 38.0 35.0 40.0 29.0 41.0 41 35.93430627228182 38.0 35.0 40.0 29.0 41.0 42 35.867779604638415 38.0 35.0 40.0 29.0 41.0 43 35.69801722313565 38.0 35.0 40.0 28.0 41.0 44 35.505282521284734 38.0 34.0 40.0 27.0 41.0 45 35.34244412248287 38.0 34.0 40.0 26.0 41.0 46 35.18724869361377 38.0 34.0 40.0 26.0 41.0 47 35.01319952031342 38.0 34.0 40.0 25.0 41.0 48 34.95236234785959 38.0 34.0 40.0 25.0 41.0 49 34.74572541741957 38.0 34.0 40.0 24.0 41.0 50 34.550391508896446 37.0 33.0 40.0 23.0 41.0 51 32.338458491374865 35.0 30.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 16.0 10 15.0 11 13.0 12 10.0 13 7.0 14 9.0 15 20.0 16 28.0 17 58.0 18 165.0 19 213.0 20 439.0 21 720.0 22 1111.0 23 1689.0 24 2235.0 25 3062.0 26 3821.0 27 4684.0 28 5701.0 29 6832.0 30 8531.0 31 11133.0 32 14587.0 33 20121.0 34 28021.0 35 33188.0 36 38158.0 37 56684.0 38 66881.0 39 60406.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.379136889742625 22.22837205011748 26.157298127377405 11.235192932762486 2 29.84719486453195 26.152414440519404 26.435125646410217 17.56526504853842 3 31.161449261206702 25.843928220655826 26.303266101244255 16.691356416893218 4 27.58306337397646 25.982299348299122 26.917796697542418 19.516840580182 5 22.384107397700326 38.74147389669375 20.787955742944426 18.0864629626615 6 25.301838979417973 35.21246750991659 25.1176154584968 14.368078052168629 7 69.2596330723274 18.811961777010858 7.438669032541634 4.489736118120106 8 80.74904903764238 5.877245817664838 8.10230781335634 5.2713973313364475 9 74.19161416703294 8.019556452706919 10.260083456782084 7.528745923478053 10 39.99576747138974 26.61690732390239 18.749287795666543 14.638037409041333 11 28.791775871331133 24.80234634021933 26.52465990547353 19.88121788297601 12 27.825619821257057 22.132597524513393 30.534438131826985 19.507344522402555 13 22.5140677313104 25.753308697846293 30.797614590285804 20.9350089805575 14 18.104912446347274 29.491770987644273 30.355640929636923 22.04767563637153 15 17.44344419302501 26.96636225018585 35.80881993846555 19.781373618323595 16 19.80199362950181 26.189584723827508 32.395122824724474 21.613298821946202 17 19.93466712247744 26.00102014792145 29.32029931574121 24.744013413859903 18 21.07012431696213 26.92566485970253 30.720560864304048 21.283649959031294 19 22.39387477141632 28.009029394368568 27.422444339535616 22.174651494679495 20 23.887197686217693 27.14244629301036 28.67972238953372 20.29063363123823 21 22.7218957387119 27.848139043991164 29.32436905478954 20.105596162507393 22 20.603189590150144 25.700402090217978 27.82887561249573 25.867532707136153 23 20.268928356313793 26.991323316348954 29.37591908273508 23.36382924460217 24 21.328417088562947 24.880485329947312 30.54610471709887 23.244992864390866 25 20.127301437431832 28.067362320727995 28.248058734473947 23.55727750736623 26 19.39501972466859 28.259725319745833 27.74178319686142 24.60347175872416 27 20.44338450351897 29.089409453732497 28.727202678430924 21.740003364317616 28 17.59185401032086 28.312089295501043 31.158193469968037 22.937863224210066 29 19.589010619305757 26.034934639990887 29.510763103203157 24.865291637500203 30 19.852187077764576 27.959921209852023 28.778752706376466 23.409139006006935 31 20.484353209938845 30.45874098552801 25.873230341803815 23.18367546272933 32 20.84493208962108 30.470678886736447 25.035135413783934 23.649253609858537 33 19.99788373569487 27.85627852208783 26.466055663177546 25.67978207903976 34 18.344213102389208 28.975185444442637 27.24310450547244 25.437496947695713 35 19.23629990178363 26.94926934618286 26.598457840216618 27.215972911816895 36 20.120518539017944 27.51713360139348 26.907215376016758 25.45513248357182 37 18.869752071497174 30.21130085138941 28.53456836347653 22.38437871363688 38 18.003982917948637 29.242160326013227 26.889851156077206 25.864005599960933 39 19.619940636073082 27.6023268054719 27.45174646068361 25.325986097771413 40 19.828853907220804 25.751138170353848 29.13146342389859 25.288544498526754 41 18.122819298159936 26.22594105932594 27.560001519369244 28.09123812314488 42 19.368973394759262 25.423388518994827 28.44720463190567 26.760433454340244 43 21.036752456765807 25.769587654039622 28.07061811196666 25.12304177722791 44 19.89993868259834 27.003261217557395 27.258840829792657 25.837959270051602 45 19.77838914302148 26.849425081530438 26.219158160912055 27.153027614536025 46 20.692723849213454 27.747209515592523 26.88062641423432 24.679440220959698 47 18.493436867494722 25.812184256078837 30.412074644440466 25.28230423198598 48 18.975022654880703 24.95970958342151 29.00964256838518 27.055625193312604 49 19.191532772251975 24.65013809981171 31.24338667404646 24.914942453889857 50 18.315724929050884 24.770331059705786 30.244401395649177 26.669542615594153 51 17.86316994687634 24.682967328134918 27.775155057057745 29.678707667930997 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 118.0 1 339.5 2 561.0 3 794.0 4 1027.0 5 878.5 6 730.0 7 683.0 8 636.0 9 576.5 10 517.0 11 543.5 12 570.0 13 594.0 14 618.0 15 673.5 16 729.0 17 760.5 18 792.0 19 899.0 20 1006.0 21 1052.0 22 1098.0 23 1464.0 24 1830.0 25 2391.0 26 3471.5 27 3991.0 28 4620.0 29 5249.0 30 6152.0 31 7055.0 32 8376.0 33 9697.0 34 10833.5 35 11970.0 36 12516.0 37 13062.0 38 13961.0 39 14860.0 40 17233.5 41 19607.0 42 21760.5 43 23914.0 44 27527.5 45 31141.0 46 35637.0 47 40133.0 48 38984.5 49 37836.0 50 35763.5 51 33691.0 52 28942.0 53 24193.0 54 20849.5 55 17506.0 56 16035.0 57 14564.0 58 13619.0 59 12674.0 60 11568.0 61 10462.0 62 8992.5 63 7523.0 64 6607.0 65 5691.0 66 4730.5 67 3770.0 68 3149.5 69 2529.0 70 2131.5 71 1734.0 72 1404.0 73 1074.0 74 856.5 75 519.5 76 400.0 77 302.0 78 204.0 79 155.0 80 106.0 81 77.0 82 48.0 83 41.0 84 34.0 85 25.5 86 17.0 87 12.5 88 8.0 89 6.5 90 5.0 91 3.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 368574.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.47389130008368 #Duplication Level Percentage of deduplicated Percentage of total 1 73.7948244541772 29.86763703467125 2 10.118830123407244 8.190968609975943 3 4.100506757883666 4.9789039438152605 4 2.4641292789443567 3.989316023413899 5 1.6576413052960421 3.3545597002540424 6 1.137979947053746 2.7635086007236978 7 0.8409372072823048 2.3825200782417957 8 0.6480010246898313 2.098169842851126 9 0.4914379004782262 1.7901363748227361 >10 4.669310493056458 36.523917113154354 >50 0.051604527151586664 1.3763297634148788 >100 0.02144603725780225 1.634561126199854 >500 0.002680754657225281 0.7744228369234291 >1k 6.701886643063203E-4 0.2750489515377783 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCG 1014 0.2751143596672581 No Hit GAATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTC 850 0.2306185460721592 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGC 807 0.2189519608002735 No Hit GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC 696 0.18883589184261507 Illumina PCR Primer Index 11 (95% over 23bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 502 0.13620060015085167 No Hit CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC 419 0.1136813774167467 Illumina PCR Primer Index 11 (95% over 23bp) TAGAGGGGGTTTATTAAGTCCTGTGCCAGCACTTCGCTCATAAAGTTTTAA 400 0.10852637462219256 No Hit CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT 395 0.10716979493941516 Illumina PCR Primer Index 11 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18910720777917053 0.0 2 0.0 0.0 0.0 0.9097223352705291 0.0 3 0.0 0.0 0.0 1.2220069782458882 0.0 4 0.0 0.0 0.0 1.6349498336833308 0.0 5 0.0 0.0 0.0 3.0476919153277224 0.0 6 0.0 0.0 0.0 3.8304383922902865 0.0 7 0.0 0.0 0.0 4.687254119932496 0.0 8 0.0 0.0 0.0 6.119802264945438 0.0 9 0.0 0.0 0.0 6.6258064866214115 0.0 10 0.0 0.0 0.0 8.090098596211345 0.0 11 0.0 0.0 0.0 9.568499134502163 0.0 12 0.0 0.0 0.0 11.014070444469768 0.0 13 0.0 0.0 0.0 11.542051257006735 0.0 14 0.0 0.0 0.0 11.741739786311568 0.0 15 0.0 0.0 0.0 12.134605262443905 0.0 16 0.0 0.0 0.0 12.935529907155686 0.0 17 0.0 0.0 0.0 13.93804229272819 0.0 18 0.0 0.0 0.0 15.058848426638884 0.0 19 0.0 0.0 0.0 15.701324564402263 0.0 20 0.0 0.0 0.0 16.338917015307644 0.0 21 0.0 0.0 0.0 17.10592716794999 0.0 22 0.0 0.0 0.0 17.995572123915416 0.0 23 0.0 0.0 0.0 18.784016235545643 0.0 24 0.0 0.0 0.0 19.42432184581658 0.0 25 0.0 0.0 0.0 19.983775306993984 0.0 26 0.0 0.0 0.0 20.47919820714429 0.0 27 0.0 0.0 0.0 20.974892423231157 0.0 28 0.0 0.0 0.0 21.461090581538578 0.0 29 0.0 0.0 0.0 22.022171938335315 0.0 30 0.0 0.0 0.0 22.608214361295154 0.0 31 0.0 0.0 0.0 23.179605723680996 0.0 32 0.0 0.0 0.0 23.719795753362963 0.0 33 0.0 0.0 0.0 24.255644728060037 0.0 34 0.0 0.0 0.0 24.755137367258676 0.0 35 0.0 0.0 0.0 25.299125820052417 0.0 36 0.0 0.0 0.0 25.855866121864267 0.0 37 0.0 0.0 0.0 26.376521404114236 0.0 38 0.0 0.0 0.0 26.885238785155764 0.0 39 0.0 0.0 0.0 27.415390125185173 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATGCA 35 1.2089185E-7 45.000004 10 GGTACCC 20 7.027043E-4 45.0 37 CGAACTA 20 7.027043E-4 45.0 22 GTCGATG 20 7.027043E-4 45.0 1 CTCCGAT 20 7.027043E-4 45.0 42 TTTCGTC 25 3.885631E-5 45.0 16 TGGCGCG 20 7.027043E-4 45.0 1 TAAACGG 25 3.885631E-5 45.0 2 ACGGGCA 45 3.8380676E-10 45.0 5 CGTTAAC 20 7.027043E-4 45.0 25 CCACTAG 20 7.027043E-4 45.0 42 CACTAGA 20 7.027043E-4 45.0 43 CTTTGCG 20 7.027043E-4 45.0 1 TCCGTTA 20 7.027043E-4 45.0 23 TTACGCG 20 7.027043E-4 45.0 1 GCTACGA 90 0.0 45.0 10 TCGATGG 30 2.1614742E-6 44.999996 2 CGTCATA 30 2.1614742E-6 44.999996 38 CGGGAGT 100 0.0 42.75 6 AATATAC 95 0.0 42.63158 16 >>END_MODULE