SRR2936269.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936269.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	186149
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	772	0.4147215402715029	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	377	0.2025259335263687	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	329	0.17674013827632704	No Hit
GGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCCT	271	0.1455823023491934	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	263	0.14128466980751977	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	205	0.11012683388038613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	25	3.8781727E-5	45.0	24
CCCTCGT	145	0.0	45.0	14
GGTAACG	25	3.8781727E-5	45.0	1
CGACGGT	25	3.8781727E-5	45.0	28
TATGGGT	35	1.2046075E-7	45.0	4
CCTCGTG	145	0.0	45.0	15
GACCCTC	25	3.8781727E-5	45.0	44
ACGGGCG	20	7.01804E-4	45.0	5
ACCTACA	20	7.01804E-4	45.0	25
TCGCTTC	20	7.01804E-4	45.0	12
GCCCTCG	145	0.0	45.0	13
GAAGTCC	20	7.01804E-4	45.0	9
CTACCGC	20	7.01804E-4	45.0	45
CTTCTCG	20	7.01804E-4	45.0	15
CTATTAG	20	7.01804E-4	45.0	19
CGATGTG	25	3.8781727E-5	45.0	10
GCGGATG	25	3.8781727E-5	45.0	9
CGGTCTA	25	3.8781727E-5	45.0	31
ACGTAGG	20	7.01804E-4	45.0	2
TTGTTAC	20	7.01804E-4	45.0	36