SRR2936266.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936266.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	232374
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	1300	0.5594429669412241	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	1257	0.5409383149577836	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	1040	0.4475543735529793	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	370	0.15922607520634838	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	352	0.15147994181793142	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	336	0.14459448991711638	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	281	0.12092574900806458	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCT	273	0.11748302305765707	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	260	0.11188859338824482	No Hit
GCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	249	0.10715484520643445	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAATAC	70	0.0	45.000004	3
AGTACGG	35	1.2063356E-7	45.000004	2
GCGACGC	25	3.8811704E-5	45.0	33
GTATTGC	20	7.021659E-4	45.0	9
GTATTAC	20	7.021659E-4	45.0	30
CTATCGA	20	7.021659E-4	45.0	35
ACCGAAA	25	3.8811704E-5	45.0	19
CGGGCAT	25	3.8811704E-5	45.0	6
TACTCGT	20	7.021659E-4	45.0	16
TTACGGG	75	0.0	45.0	3
GATCTAT	20	7.021659E-4	45.0	9
CGACTAA	20	7.021659E-4	45.0	36
AGTAACG	20	7.021659E-4	45.0	1
GCATATC	25	3.8811704E-5	45.0	28
CCTTATC	65	0.0	41.538464	43
TACGGGG	150	0.0	40.5	4
GTACGGG	100	0.0	40.5	3
CCGTCAG	40	3.4423647E-7	39.375	30
TGCATAG	40	3.4423647E-7	39.375	1
ACGGGCT	35	6.2267954E-6	38.57143	5