SRR2936265.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936265.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	231810
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG	833	0.35934601613390277	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC	774	0.33389413744014496	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	655	0.28255899227815884	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	613	0.264440705750399	No Hit
GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	437	0.18851645744359605	TruSeq Adapter, Index 16 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	277	0.11949441352832062	No Hit
CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT	246	0.106121392519736	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATCAC	20	7.021623E-4	45.000004	22
AGCGTTG	20	7.021623E-4	45.000004	1
GCCCATA	20	7.021623E-4	45.000004	13
CGAACTA	25	3.8811413E-5	45.000004	34
TTGGACG	30	2.1579817E-6	45.000004	1
CAAGTAA	25	3.8811413E-5	45.000004	19
GTACAAC	20	7.021623E-4	45.000004	16
CGCGGGT	20	7.021623E-4	45.000004	4
CCGATAT	20	7.021623E-4	45.000004	12
TGTGGTA	25	3.8811413E-5	45.000004	39
GGCCGAT	20	7.021623E-4	45.000004	8
TAAACGG	25	3.8811413E-5	45.000004	2
CACGCCT	20	7.021623E-4	45.000004	33
CCTGTTA	20	7.021623E-4	45.000004	14
TAACGCG	20	7.021623E-4	45.000004	1
TATGCCA	20	7.021623E-4	45.000004	10
TAGCCGT	20	7.021623E-4	45.000004	44
TCGGCCG	20	7.021623E-4	45.000004	16
CGTTATT	45	3.8198777E-10	45.000004	1
ACCTATT	20	7.021623E-4	45.000004	33