SRR2936260.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936260.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	648412
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3833	0.5911364996329495	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1244	0.1918533278224339	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	738	0.1138165240618619	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	697	0.1074933838362029	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTGCG	45	3.8380676E-10	45.000004	1
CGCATCG	25	3.8889186E-5	45.0	21
TTCACGG	55	1.8189894E-12	45.0	2
CGCGATC	20	7.0310105E-4	45.0	39
GAATACG	20	7.0310105E-4	45.0	1
TAGTTCG	20	7.0310105E-4	45.0	1
ACGTATA	20	7.0310105E-4	45.0	32
ATCGCAT	20	7.0310105E-4	45.0	13
CGTTATT	390	0.0	42.692307	1
CGGTTTT	455	0.0	41.538464	1
CGTTTTT	1730	0.0	40.83815	1
ATAACGG	50	1.0804797E-9	40.5	2
CGTTTTA	250	0.0	40.499996	1
TACGGGT	45	1.9261279E-8	40.000004	4
TATCGCG	45	1.9261279E-8	40.000004	32
AACACGT	85	0.0	39.705883	41
CGGGTCA	40	3.4551158E-7	39.375	6
CACAACG	105	0.0	38.57143	12
TTAATCG	70	0.0	38.571426	20
TAACGCC	35	6.2440777E-6	38.571426	12