SRR2936259.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936259.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	555521
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1442	0.2595761456362586	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCG	1279	0.23023432057473975	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTC	1274	0.22933426459125758	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1199	0.21583342483902498	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGC	1050	0.18901175653125624	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	734	0.13212821837518293	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	45	3.8380676E-10	45.000004	1
CACGTTG	30	2.1634678E-6	45.000004	1
TCGCACC	25	3.8881946E-5	45.0	45
CGCGACT	20	7.030137E-4	45.0	14
TCATCGA	50	2.1827873E-11	45.0	16
TATACGA	25	3.8881946E-5	45.0	41
CGTTGAT	105	0.0	42.857143	25
CGTTATT	85	0.0	42.35294	1
GTACCCG	40	3.4539153E-7	39.375	43
CGTTTTA	80	0.0	39.375	1
TCGTTGA	115	0.0	39.130436	24
AGCCGTT	70	0.0	38.57143	45
ATAACGG	35	6.2424606E-6	38.57143	2
GGCCTAT	140	0.0	38.57143	8
AGGCGAT	95	0.0	37.894737	7
CTCAACC	120	0.0	37.500004	36
GTTTACG	30	1.1391626E-4	37.500004	1
GACGTCC	30	1.1391626E-4	37.500004	10
GTTAGCG	30	1.1391626E-4	37.500004	1
ACGGGCC	90	0.0	37.500004	5