SRR2936229.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936229.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337682
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	514	0.1522142133723444	No Hit
GGAAAGAGACATAAATTGGAAATTCAAAATAGTCTGATTCAAGCTTTGGAG	392	0.11608554794155447	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	363	0.10749758648669458	No Hit
CTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT	361	0.10690531328291114	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	75	0.0	45.000004	5
GACGTGC	35	1.2085184E-7	45.000004	43
GCTAACG	35	1.2085184E-7	45.000004	1
CGGGTCC	25	3.8849343E-5	45.0	6
ACAGTCG	20	7.026202E-4	45.0	26
CGTGCAG	20	7.026202E-4	45.0	16
CGGCATG	25	3.8849343E-5	45.0	33
TTCACGG	45	3.8380676E-10	45.0	2
TGACGTA	20	7.026202E-4	45.0	20
CGACAAG	20	7.026202E-4	45.0	41
CTGACGT	20	7.026202E-4	45.0	19
ACGGGTC	45	3.8380676E-10	45.0	5
ACGGGCC	25	3.8849343E-5	45.0	5
ATCGTCT	20	7.026202E-4	45.0	37
CCGTAAC	20	7.026202E-4	45.0	19
GCTTACA	25	3.8849343E-5	45.0	32
ACGTGCA	20	7.026202E-4	45.0	15
TCGTCTC	20	7.026202E-4	45.0	38
TTGCGTA	25	3.8849343E-5	45.0	20
GCGATTC	25	3.8849343E-5	45.0	9