FastQCFastQC Report
Sat 14 Jan 2017
SRR2936224.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936224.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537004
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5680.10577202404451364No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGTACG207.029925E-445.0000041
ATAGGCG302.1633332E-645.0000045
GCGAATG406.8030204E-945.0000041
CGCATGG406.8030204E-945.0000042
TTATGCG207.029925E-445.0000041
TAAACGG302.1633332E-645.0000042
CGCGCAA207.029925E-445.00000418
CCAGCGT207.029925E-445.00000428
TACGGGT207.029925E-445.0000044
AACGACG207.029925E-445.00000413
TTACGAG207.029925E-445.0000041
CGATCCA207.029925E-445.00000424
CGATAGT207.029925E-445.00000410
GTACGAG253.8880207E-545.01
CACGTGA1350.043.33333243
ACACGAC1350.041.66666426
ATTACGG603.6379788E-1241.2500042
TACGGGA1900.040.2631574
GCGAGAC1400.040.1785721
GACACGA1400.040.1785725