Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936224.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 537004 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 568 | 0.10577202404451364 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGTACG | 20 | 7.029925E-4 | 45.000004 | 1 |
ATAGGCG | 30 | 2.1633332E-6 | 45.000004 | 5 |
GCGAATG | 40 | 6.8030204E-9 | 45.000004 | 1 |
CGCATGG | 40 | 6.8030204E-9 | 45.000004 | 2 |
TTATGCG | 20 | 7.029925E-4 | 45.000004 | 1 |
TAAACGG | 30 | 2.1633332E-6 | 45.000004 | 2 |
CGCGCAA | 20 | 7.029925E-4 | 45.000004 | 18 |
CCAGCGT | 20 | 7.029925E-4 | 45.000004 | 28 |
TACGGGT | 20 | 7.029925E-4 | 45.000004 | 4 |
AACGACG | 20 | 7.029925E-4 | 45.000004 | 13 |
TTACGAG | 20 | 7.029925E-4 | 45.000004 | 1 |
CGATCCA | 20 | 7.029925E-4 | 45.000004 | 24 |
CGATAGT | 20 | 7.029925E-4 | 45.000004 | 10 |
GTACGAG | 25 | 3.8880207E-5 | 45.0 | 1 |
CACGTGA | 135 | 0.0 | 43.333332 | 43 |
ACACGAC | 135 | 0.0 | 41.666664 | 26 |
ATTACGG | 60 | 3.6379788E-12 | 41.250004 | 2 |
TACGGGA | 190 | 0.0 | 40.263157 | 4 |
GCGAGAC | 140 | 0.0 | 40.17857 | 21 |
GACACGA | 140 | 0.0 | 40.17857 | 25 |