SRR2936218.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936218.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	692044
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	2879	0.4160140106698418	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	2451	0.35416823207772913	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	2136	0.3086508950297958	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1652	0.23871314540693944	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	830	0.11993457063423713	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	722	0.10432862650351711	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	703	0.10158313633237193	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTATCG	40	6.8084773E-9	45.000004	1
TAAACGG	35	1.2109922E-7	45.000004	2
ATTCGAT	20	7.0313376E-4	45.000004	14
CAATGCG	20	7.0313376E-4	45.000004	1
TTCGATA	20	7.0313376E-4	45.000004	15
CCGCATT	20	7.0313376E-4	45.000004	18
ACGGTAT	20	7.0313376E-4	45.000004	32
GATCGTA	25	3.889192E-5	45.0	26
CACGACA	25	3.889192E-5	45.0	23
ACGGGTC	25	3.889192E-5	45.0	5
TCATGCC	25	3.889192E-5	45.0	21
ATAACGC	25	3.889192E-5	45.0	11
CGTTATT	80	0.0	42.187504	1
AACACGT	190	0.0	41.44737	41
TTTAGCG	50	1.0804797E-9	40.5	1
TACGAAT	185	0.0	40.135136	12
CGAATAT	185	0.0	40.135136	14
GCTACGA	185	0.0	40.135136	10
CTATCGG	45	1.9263098E-8	40.000004	2
CGTATGG	85	0.0	39.705883	2