SRR2936217.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936217.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615363
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2816	0.45761607376459096	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	861	0.13991741459918777	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCG	807	0.13114210636648613	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGC	775	0.12594192371007032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATCGT	85	0.0	45.000004	21
CGAACGG	20	7.030729E-4	45.0	2
CGACGTT	35	1.2107012E-7	45.0	27
CAACCGG	35	1.2107012E-7	45.0	2
ACGGGCC	50	2.1827873E-11	45.0	5
TGTTGCG	25	3.8886858E-5	45.0	1
TTGCGCG	20	7.030729E-4	45.0	1
ACGTCGG	20	7.030729E-4	45.0	2
TTGCACG	40	6.8066583E-9	45.0	1
CGCGTGG	20	7.030729E-4	45.0	2
TTCGCTT	20	7.030729E-4	45.0	23
GCGTATG	20	7.030729E-4	45.0	1
TCGCGTG	20	7.030729E-4	45.0	1
ATCGATA	20	7.030729E-4	45.0	14
CGAAGTT	20	7.030729E-4	45.0	13
TCACGTA	20	7.030729E-4	45.0	30
GCGCGAC	30	2.1638516E-6	44.999996	9
TACGGGT	55	1.8189894E-12	44.999996	4
AGTTCGG	30	2.1638516E-6	44.999996	2
TATACGG	30	2.1638516E-6	44.999996	2