SRR2936215.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936215.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	599856
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5269	0.8783774772612094	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1570	0.26172948174228483	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1079	0.17987650369421995	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	686	0.11436077992051427	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	664	0.11069323304259689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	20	7.0305855E-4	45.000004	9
TATTGCG	20	7.0305855E-4	45.000004	1
ACTACGG	20	7.0305855E-4	45.000004	2
AATCGGC	20	7.0305855E-4	45.000004	12
CTTAACG	25	3.888568E-5	45.0	1
GCGTTAG	25	3.888568E-5	45.0	1
GGACGTA	25	3.888568E-5	45.0	8
TATACGG	35	1.2106284E-7	45.0	2
ACGGGTA	30	2.1637607E-6	44.999996	5
CGTCATA	30	2.1637607E-6	44.999996	38
CGTTATT	395	0.0	44.430378	1
CGTTTTT	1810	0.0	42.140884	1
GCTACGA	145	0.0	41.89655	10
CACGACC	195	0.0	40.384617	27
TATAGCG	40	3.4545337E-7	39.375004	1
ACGACCA	200	0.0	39.375	28
CGAATAT	155	0.0	39.193546	14
GACCTAT	155	0.0	39.193546	33
CACGTGA	190	0.0	39.078945	43
CGTTTTA	225	0.0	39.0	1