SRR2936214.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936214.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	635795
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9739	1.5317830432765278	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2823	0.444011041294757	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1921	0.30214141350592566	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1347	0.21186074127666937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATACG	30	2.1639644E-6	45.000004	1
GTAAGCG	20	7.030906E-4	45.0	1
GCTAACG	25	3.888832E-5	45.0	1
CGTTATT	800	0.0	44.4375	1
CGTTTTT	3975	0.0	43.132076	1
CGTTTTA	515	0.0	41.504852	1
CTACGAA	55	6.002665E-11	40.909092	11
TACGAAT	55	6.002665E-11	40.909092	12
AGGCGAT	210	0.0	40.714287	7
CGGTTTT	875	0.0	40.62857	1
ACTACGG	50	1.0804797E-9	40.5	2
ATAGCGG	45	1.925946E-8	40.000004	2
CCATACG	30	1.13934795E-4	37.500004	2
CGAATAT	60	1.546141E-10	37.500004	14
TTAACGG	30	1.13934795E-4	37.500004	2
GCTACGA	60	1.546141E-10	37.500004	10
TCCGAAC	55	2.744855E-9	36.81818	17
GTTACGG	55	2.744855E-9	36.81818	2
GACGGGT	55	2.744855E-9	36.81818	4
AACGGGA	295	0.0	36.61017	4