SRR2936209.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936209.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	385836
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	1032	0.26747115354710294	TruSeq Adapter, Index 16 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	916	0.23740656652049058	TruSeq Adapter, Index 16 (95% over 24bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCG	791	0.2050093822245721	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTC	722	0.1871261364932251	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGCT	672	0.17416726277485772	TruSeq Adapter, Index 27 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGC	661	0.17131631055681687	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	586	0.1518779999792658	No Hit
TCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	519	0.1345131091966535	TruSeq Adapter, Index 16 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	35	1.2091186E-7	45.000004	15
GGCGTCA	60	0.0	45.000004	36
ATTACGG	30	2.161738E-6	45.000004	2
AGGCGTC	60	0.0	45.000004	35
ATCCGGG	35	1.2091186E-7	45.000004	3
AACGCAT	35	1.2091186E-7	45.000004	14
TTAACGG	30	2.161738E-6	45.000004	2
ACGTCCG	30	2.161738E-6	45.000004	23
CGTCATA	60	0.0	45.000004	38
AGTACGG	30	2.161738E-6	45.000004	2
TCACGAC	20	7.027454E-4	45.0	25
ACAACGG	20	7.027454E-4	45.0	2
CGCGGGC	25	3.8859722E-5	45.0	4
CGTTGAG	20	7.027454E-4	45.0	2
ATTCGTG	20	7.027454E-4	45.0	1
GTTAGCG	20	7.027454E-4	45.0	1
GTCAGAT	20	7.027454E-4	45.0	10
GGGACGA	45	3.8380676E-10	45.0	7
GCACAAG	20	7.027454E-4	45.0	15
CTACGTA	20	7.027454E-4	45.0	36