FastQCFastQC Report
Sat 14 Jan 2017
SRR2936205.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936205.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences772632
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT69130.8947338448316923No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18970.24552438936000578No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13240.17136230443471148No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9310.12049720953830542No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT7820.10121247890328125No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTATT4550.045.0000041
TCTACGG351.2112287E-745.02
GCTACGA1550.042.0967710
CGTTTTT28350.041.8253941
TACGAAT1600.040.78125412
CGAATAT1600.040.78125414
ACGGGCG1450.040.344835
CGTTTTA3850.040.3246771
CGGTTTT7550.039.337751
GCGAATG750.039.01
TACGGGA3000.039.04
AACCGAT301.1395753E-437.50000433
TTTACGG601.546141E-1037.5000042
TTAAGCG301.1395753E-437.5000041
GCGTACG301.1395753E-437.5000041
TGCGTAG301.1395753E-437.5000041
AGGCGAT1650.036.818187
GACCTAT1850.036.4864933
GGCGATA2350.036.382988
CTACGAA1800.036.2511
Produced by FastQC (version 0.11.5)