SRR2936204.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936204.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	593835
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	2373	0.3996059511480462	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	2166	0.36474778347520775	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	1804	0.30378808928406037	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1563	0.26320442547172196	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	30	2.1637225E-6	45.000004	1
TCGTGCC	30	2.1637225E-6	45.000004	22
CGTCTCA	20	7.030529E-4	45.0	40
ACGGCCC	20	7.030529E-4	45.0	26
CGCTATT	20	7.030529E-4	45.0	35
TCCACCG	20	7.030529E-4	45.0	31
GCGATTA	40	6.8048394E-9	45.0	9
GCTAGCG	20	7.030529E-4	45.0	1
AACCTTC	20	7.030529E-4	45.0	23
CACCGGA	25	3.8885206E-5	45.0	31
CGCCGGT	20	7.030529E-4	45.0	28
CATCCGG	20	7.030529E-4	45.0	2
TACGGCT	315	0.0	44.285713	7
AGGCGAT	205	0.0	41.707317	7
CGTTATT	130	0.0	41.538464	1
ACACGAC	120	0.0	41.250004	26
GGAACGC	55	6.002665E-11	40.909092	8
CGAATAT	55	6.002665E-11	40.909092	14
CGTTTTA	105	0.0	40.714287	1
ATTACGG	50	1.0804797E-9	40.5	2