SRR2936203.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936203.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	480163
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	718	0.1495325545700106	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGC	596	0.12412451604975812	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	547	0.11391964811949275	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	518	0.10788003240566224	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	25	3.8874005E-5	45.000004	13
TTGTGCG	25	3.8874005E-5	45.000004	1
TAAGTCG	25	3.8874005E-5	45.000004	1
TCGATAG	25	3.8874005E-5	45.000004	1
GCTAACG	25	3.8874005E-5	45.000004	1
ACGGTAA	25	3.8874005E-5	45.000004	38
ACACGGT	40	6.8012014E-9	45.0	36
ATTCGTG	20	7.02918E-4	45.0	31
CGATTCT	20	7.02918E-4	45.0	42
CACGACT	20	7.02918E-4	45.0	12
CTAACGG	40	6.8012014E-9	45.0	2
TCTACGT	20	7.02918E-4	45.0	25
GGTATCG	20	7.02918E-4	45.0	8
GTATCGC	20	7.02918E-4	45.0	9
ACCGTTC	20	7.02918E-4	45.0	11
CAGTACG	20	7.02918E-4	45.0	1
GCGTCTC	20	7.02918E-4	45.0	25
ATCGAGT	20	7.02918E-4	45.0	10
TACGGGT	65	0.0	41.538464	4
GTGACGG	100	0.0	40.500004	2