SRR2936200.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936200.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	749567
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2095	0.2794946949372104	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG	2060	0.2748253324919587	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC	1976	0.26361886262335454	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC	1961	0.26161770728967526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	20	7.0317136E-4	45.000004	28
GTCGATC	20	7.0317136E-4	45.000004	14
TAAGTCG	20	7.0317136E-4	45.000004	27
TAACGAG	30	2.1644864E-6	45.000004	1
ATCGTAG	20	7.0317136E-4	45.000004	1
TACGAGT	25	3.889502E-5	45.000004	23
CGTTTAG	20	7.0317136E-4	45.000004	2
TGGTCGA	20	7.0317136E-4	45.000004	12
TGCGTAG	30	2.1644864E-6	45.000004	1
AGTCGAA	20	7.0317136E-4	45.000004	23
GTTTACG	55	1.8189894E-12	45.0	1
CGTTATT	160	0.0	43.593754	1
CGAATAT	100	0.0	42.750004	14
AGGTACG	50	1.0804797E-9	40.500004	1
GTATGCG	45	1.9268555E-8	40.000004	1
TACGGCT	250	0.0	39.600002	7
GACACGA	80	0.0	39.375004	25
TATCCGG	40	3.45608E-7	39.375004	2
GGCCGAT	145	0.0	38.793106	8
CGGTCTA	35	6.24538E-6	38.57143	31