SRR2936196.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936196.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	121234
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3210	2.6477720771400763	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1784	1.4715343880429583	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	682	0.5625484600029694	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	334	0.27550027220086776	No Hit
CCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC	246	0.20291337413596844	TruSeq Adapter, Index 19 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	238	0.19631456522097762	No Hit
CCTGTCACTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC	196	0.16167081841727568	TruSeq Adapter, Index 19 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTC	192	0.15837141395978027	No Hit
CTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGCT	145	0.11960341158420906	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCG	141	0.11630400712671363	No Hit
GCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC	125	0.10310638929673195	TruSeq Adapter, Index 19 (95% over 22bp)
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	123	0.10145668706798422	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	123	0.10145668706798422	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTAG	20	7.008311E-4	45.0	14
CGTGGCG	20	7.008311E-4	45.0	27
TAGAGGA	20	7.008311E-4	45.0	4
GCGACCT	20	7.008311E-4	45.0	11
TGCCAGT	35	1.1999327E-7	45.0	24
CACGGGC	25	3.870118E-5	45.0	4
GGGTACC	40	6.728442E-9	45.0	7
GACCGAT	20	7.008311E-4	45.0	9
TGGCGAC	20	7.008311E-4	45.0	29
GCAGTCT	20	7.008311E-4	45.0	5
CGACCTC	20	7.008311E-4	45.0	12
ACCTGGT	40	6.728442E-9	45.0	11
CGCTGTA	20	7.008311E-4	45.0	1
AGGCGAT	45	3.783498E-10	45.0	7
CCTCGAT	20	7.008311E-4	45.0	15
ACGGGCT	20	7.008311E-4	45.0	5
GTAGCAT	35	1.1999327E-7	45.0	29
GGGGTCT	20	7.008311E-4	45.0	7
CCTCAAG	20	7.008311E-4	45.0	24
TGCCTCA	20	7.008311E-4	45.0	22