SRR2936194.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936194.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69968
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1187	1.6964898239195063	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	642	0.9175623142007774	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	262	0.3744568945803796	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	134	0.191516121655614	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	110	0.15721472673222045	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC	108	0.15435627715527098	TruSeq Adapter, Index 13 (95% over 22bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	99	0.1414932540589984	No Hit
GCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGC	99	0.1414932540589984	TruSeq Adapter, Index 13 (96% over 25bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	90	0.1286302309627258	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	86	0.1229133318088269	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	82	0.11719643265492798	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCG	82	0.11719643265492798	No Hit
GAATCTATCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC	77	0.11005030871255432	TruSeq Adapter, Index 13 (100% over 21bp)
CTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGCT	71	0.10147495998170591	TruSeq Adapter, Index 13 (100% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCTCA	25	3.8532326E-5	45.000004	1
TGGTTCA	20	6.9878966E-4	45.000004	13
AACGTCT	20	6.9878966E-4	45.000004	33
GTCACTT	35	1.19020115E-7	45.000004	4
CTTTATC	25	3.8532326E-5	45.000004	15
TTGTAGG	25	3.8532326E-5	45.000004	2
CAACTTT	20	6.9878966E-4	45.000004	18
TTCAACT	20	6.9878966E-4	45.000004	16
TCTGGTG	30	2.1362976E-6	45.000004	8
TAACGTC	20	6.9878966E-4	45.000004	32
CAACTAC	25	3.8532326E-5	45.000004	25
TATGCCA	40	6.657501E-9	45.000004	10
TACGGGG	30	2.1362976E-6	45.000004	4
TGTCACT	35	1.19020115E-7	45.000004	3
AGGCGAT	25	3.8532326E-5	45.000004	7
AGGCGAC	20	6.9878966E-4	45.000004	7
ATGGACC	20	6.9878966E-4	45.000004	35
CAATAAC	30	2.1362976E-6	45.000004	29
AGTGTAC	20	6.9878966E-4	45.000004	32
AACTACA	25	3.8532326E-5	45.000004	26