SRR2936187.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936187.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	264115
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4602	1.7424228082464077	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2670	1.0109232720595196	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1011	0.3827878007686046	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	678	0.25670635897241734	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	531	0.2010487855668932	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTC	472	0.1787100316150162	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCG	416	0.15750714650814987	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGC	349	0.13213940896957765	No Hit
GAATCTATCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTC	322	0.12191658936448138	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCG	308	0.11661586808776479	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTA	65	0.0	45.000004	1
TTTAGCG	20	7.02341E-4	45.0	1
TTAGGCG	20	7.02341E-4	45.0	5
TCGCAAA	20	7.02341E-4	45.0	1
GGCACCG	35	1.2071723E-7	45.0	8
CGTGACA	20	7.02341E-4	45.0	26
GGACTAC	20	7.02341E-4	45.0	8
CACGCCG	20	7.02341E-4	45.0	26
CTACGGG	20	7.02341E-4	45.0	3
ACGTGAC	20	7.02341E-4	45.0	25
TTGCGCA	25	3.8826212E-5	45.0	1
GAGCCCC	25	3.8826212E-5	45.0	37
CAATGGC	20	7.02341E-4	45.0	16
TGTAACG	30	2.1591313E-6	44.999996	1
CGTTTTA	955	0.0	44.293194	1
CGTTATT	445	0.0	43.988766	1
CGTTTTT	1730	0.0	43.439304	1
ACAACGA	70	0.0	41.785713	13
AGCGACT	70	0.0	41.785713	19
CACAACG	70	0.0	41.785713	12