SRR2936186.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936186.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169003
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2369	1.401750264788199	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG	1448	0.8567895244463115	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC	1420	0.8402217712111619	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1348	0.79761897717792	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGC	1204	0.7124133891114359	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG	891	0.5272095761613699	No Hit
GAATCTATCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC	783	0.4633053851115069	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGC	778	0.4603468577480873	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	504	0.2982195582326941	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	494	0.2923025035058549	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCT	327	0.1934876895676408	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG	313	0.185203812950066	No Hit
GAATATGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC	277	0.16390241593344498	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTT	270	0.15976047762465756	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCT	262	0.15502683384318622	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	237	0.1402341970260883	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTC	233	0.13786737513535263	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	221	0.13076690946314562	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	217	0.12840008757240995	No Hit
GAATCTATCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTT	209	0.12366644379093862	No Hit
GAATGAATGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCT	195	0.11538256717336379	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.2037162E-7	45.000004	4
ATATGCA	35	1.2037162E-7	45.000004	25
TACGGGG	35	1.2037162E-7	45.000004	4
GGTACCC	20	7.016201E-4	45.0	8
GTACCCA	20	7.016201E-4	45.0	9
CGCGGCG	20	7.016201E-4	45.0	21
GGTCAGA	20	7.016201E-4	45.0	8
TACGGGT	20	7.016201E-4	45.0	4
GCTCTAT	20	7.016201E-4	45.0	18
CTACGAA	20	7.016201E-4	45.0	11
GGAACGA	20	7.016201E-4	45.0	9
GCTACGA	20	7.016201E-4	45.0	10
ATACGTC	20	7.016201E-4	45.0	6
ATTGCGG	20	7.016201E-4	45.0	2
AGCTACG	20	7.016201E-4	45.0	9
GACCTAT	20	7.016201E-4	45.0	33
AATACGT	20	7.016201E-4	45.0	5
CTAGCGG	20	7.016201E-4	45.0	2
TCGCAGG	25	3.8766506E-5	44.999996	3
CATAGGA	25	3.8766506E-5	44.999996	4

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content