SRR2936184.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936184.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45514
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1148	2.5223008305136885	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	651	1.4303291294986158	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC	318	0.6986861185569275	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCG	303	0.6657292261721668	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	288	0.632772333787406	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGC	287	0.6305752076284221	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCG	231	0.5075361427253152	No Hit
GAATCTATCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC	202	0.44381948411477784	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	198	0.4350309794788417	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGC	180	0.3954827086171288	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	117	0.25706376060113373	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	90	0.1977413543085644	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT	71	0.15599595728786747	No Hit
GAATATGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC	66	0.14501032649294723	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC	60	0.13182756953904293	No Hit
GAATGAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTC	59	0.12963044338005889	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCG	57	0.1252361910620908	No Hit
GAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT	54	0.11864481258513865	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTC	52	0.11425056026717054	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTT	48	0.10546205563123434	No Hit
CCTGTCACTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC	48	0.10546205563123434	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGAC	20	6.962015E-4	45.000004	5
CGTTATT	40	6.5701897E-9	45.000004	1
AGCTCGC	20	6.962015E-4	45.000004	19
AATTCGA	20	6.962015E-4	45.000004	13
GTATCTT	20	6.962015E-4	45.000004	5
TTCGAGC	20	6.962015E-4	45.000004	15
GAGCTCG	20	6.962015E-4	45.000004	18
GGCGACT	20	6.962015E-4	45.000004	10
CTAGGGA	20	6.962015E-4	45.000004	5
GCTCGCA	20	6.962015E-4	45.000004	20
GTAAGGG	20	6.962015E-4	45.000004	3
CGAGCTC	20	6.962015E-4	45.000004	17
GAATTCG	20	6.962015E-4	45.000004	12
CGCATTT	20	6.962015E-4	45.000004	23
AGTCTCT	20	6.962015E-4	45.000004	7
GCATTTT	20	6.962015E-4	45.000004	24
ACGGCGC	20	6.962015E-4	45.000004	8
CTCGCAT	20	6.962015E-4	45.000004	21
CGACTGT	20	6.962015E-4	45.000004	12
TCGAGCT	20	6.962015E-4	45.000004	16

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content