SRR2936183.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936183.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	147530
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3600	2.4401816579678712	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1928	1.3068528434894597	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	748	0.5070155222666576	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	391	0.2650308411848437	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTC	307	0.20809326916559345	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCG	303	0.20538195621229582	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	229	0.15522266657628955	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	205	0.13895478885650375	No Hit
GAATCTATCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTC	179	0.12133125466006914	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCG	178	0.12065342642174474	No Hit
CCTGTCACTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	166	0.11251948756185182	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGC	162	0.1098081746085542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCTATT	30	2.1526084E-6	45.000004	3
TACGGCG	30	2.1526084E-6	45.000004	15
CATTCAA	30	2.1526084E-6	45.000004	1
TGCGAAG	30	2.1526084E-6	45.000004	2
ATGGGTC	20	7.0132833E-4	45.0	5
GAGTGTC	20	7.0132833E-4	45.0	11
CGGGTAA	20	7.0132833E-4	45.0	6
TAGAGGC	20	7.0132833E-4	45.0	4
ATCTATC	70	0.0	45.0	3
GGATGAC	25	3.874235E-5	45.0	8
GGCACCG	20	7.0132833E-4	45.0	8
GGATCAC	20	7.0132833E-4	45.0	8
TAACGGG	35	1.2023156E-7	45.0	3
TGAAACG	20	7.0132833E-4	45.0	4
ACGGGAC	25	3.874235E-5	45.0	5
GTTAATC	20	7.0132833E-4	45.0	40
CTACGGG	20	7.0132833E-4	45.0	3
TTGAACG	20	7.0132833E-4	45.0	14
CGTAAGG	35	1.2023156E-7	45.0	3
TTACGGG	35	1.2023156E-7	45.0	3