SRR2936180.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936180.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	79886
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1939	2.427208772500814	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1048	1.3118694139148286	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	397	0.49695816538567456	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	226	0.28290313697018254	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGC	102	0.12768194677415318	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97	0.12142302781463585	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC	88	0.1101569736875047	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAAGGC	30	2.1401356E-6	45.000004	4
CAAGGAT	30	2.1401356E-6	45.000004	5
ATCTATC	25	3.8581777E-5	45.0	3
AGGAGGC	35	1.1930388E-7	45.0	7
CTATCTC	45	3.7471182E-10	45.0	5
GTAGGGC	20	6.993879E-4	45.0	5
ACGGGAA	20	6.993879E-4	45.0	5
CGTTATT	235	0.0	45.0	1
CAGGGTC	20	6.993879E-4	45.0	6
ATAAGGA	25	3.8581777E-5	45.0	4
GCTAGGA	20	6.993879E-4	45.0	4
TAGGCGA	20	6.993879E-4	45.0	6
GGCGATA	20	6.993879E-4	45.0	8
CGAAGGA	25	3.8581777E-5	45.0	4
CGTTTTA	425	0.0	44.470585	1
CGTTTTT	975	0.0	43.615387	1
CGGTTTT	110	0.0	40.909092	1
CGGTTTA	55	5.820766E-11	40.909092	1
GTTTTAT	465	0.0	40.64516	2
AGGCGAT	45	1.88993E-8	40.0	7