SRR2936179.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936179.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	81070
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1651	2.0365116565930674	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	915	1.1286542494140865	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	375	0.4625632169729863	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	175	0.21586283458739358	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	165	0.20352781546811397	No Hit
CCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC	137	0.16898976193413098	RNA PCR Primer, Index 27 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC	101	0.12458369310472432	Illumina PCR Primer Index 6 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC	98	0.12088318736894044	RNA PCR Primer, Index 27 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	94	0.11594917972122856	No Hit
CTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGCT	92	0.11348217589737264	RNA PCR Primer, Index 27 (96% over 25bp)
GCTGTCACTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC	85	0.1048476625138769	Illumina PCR Primer Index 6 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCG	83	0.10238065869002098	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTT	45	3.7471182E-10	45.000004	1
AGGGGCA	20	6.994505E-4	45.0	5
CGTTAGG	20	6.994505E-4	45.0	3
ATGATGG	20	6.994505E-4	45.0	2
TATAAGG	25	3.8586964E-5	45.0	3
TGTCACT	70	0.0	45.0	3
GGGGGTC	20	6.994505E-4	45.0	6
AGACGGG	20	6.994505E-4	45.0	3
AAAGGTA	20	6.994505E-4	45.0	5
ACGGGCG	20	6.994505E-4	45.0	5
TTAGGCT	20	6.994505E-4	45.0	5
AGCATAG	20	6.994505E-4	45.0	2
AAGGATA	20	6.994505E-4	45.0	6
TCACTTA	70	0.0	45.0	5
CGTTGTT	20	6.994505E-4	45.0	1
CGGTTTA	25	3.8586964E-5	45.0	1
CGTTTTA	335	0.0	45.0	1
AGGTATG	30	2.1405376E-6	44.999996	7
CGTTTTT	620	0.0	43.54839	1
CGTTATT	110	0.0	42.954544	1