SRR2936178.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936178.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	102564
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3295	3.212628212628213	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1973	1.9236769236769238	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	776	0.7566007566007565	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	356	0.3471003471003471	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG	185	0.18037518037518038	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	165	0.16087516087516088	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC	163	0.15892515892515893	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	145	0.14137514137514137	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG	143	0.13942513942513943	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC	136	0.1326001326001326	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC	107	0.10432510432510432	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATT	280	0.0	45.000004	1
TACGAAT	35	1.1975135E-7	45.000004	12
CGAATAT	35	1.1975135E-7	45.000004	14
GCTACGA	35	1.1975135E-7	45.000004	10
TGACTAT	35	1.1975135E-7	45.000004	23
CGTTGTT	20	7.0032396E-4	45.0	1
AGGCGAT	40	6.710252E-9	45.0	7
TATGCCA	20	7.0032396E-4	45.0	10
ACGGGCA	25	3.8659222E-5	45.0	5
AACGGGC	25	3.8659222E-5	45.0	4
CGGGGAT	20	7.0032396E-4	45.0	6
ATGCGGG	20	7.0032396E-4	45.0	3
TGAGGAC	20	7.0032396E-4	45.0	5
AGGATGC	40	6.710252E-9	45.0	7
AGGATAC	25	3.8659222E-5	45.0	7
TGGGAGA	25	3.8659222E-5	45.0	6
GCATAGG	20	7.0032396E-4	45.0	3
TCGCATT	30	2.1461492E-6	44.999996	22
CGCATTT	30	2.1461492E-6	44.999996	23
AGGACTA	30	2.1461492E-6	44.999996	7