##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936178.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 102564 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.586931086931088 31.0 31.0 34.0 30.0 34.0 2 31.744832494832494 31.0 31.0 34.0 30.0 34.0 3 30.67027417027417 31.0 30.0 34.0 26.0 34.0 4 35.00880425880426 37.0 35.0 37.0 32.0 37.0 5 31.55881205881206 35.0 35.0 37.0 0.0 37.0 6 33.667124917124916 37.0 35.0 37.0 17.0 37.0 7 21.47263172263172 32.0 0.0 37.0 0.0 37.0 8 28.448149448149447 35.0 17.0 37.0 17.0 37.0 9 34.876379626379624 37.0 32.0 39.0 31.0 39.0 10 36.37496587496587 37.0 35.0 39.0 32.0 39.0 11 36.87013962013962 39.0 37.0 39.0 33.0 39.0 12 37.248030498030495 39.0 37.0 39.0 34.0 39.0 13 37.13193713193713 39.0 37.0 39.0 34.0 39.0 14 38.63193713193713 40.0 38.0 41.0 35.0 41.0 15 38.73647673647674 40.0 38.0 41.0 35.0 41.0 16 38.738923988923986 40.0 38.0 41.0 35.0 41.0 17 38.67596817596817 40.0 38.0 41.0 35.0 41.0 18 38.43809718809719 40.0 38.0 41.0 34.0 41.0 19 38.217737217737216 40.0 37.0 41.0 34.0 41.0 20 37.96980421980422 40.0 36.0 41.0 34.0 41.0 21 37.845657345657344 40.0 35.0 41.0 33.0 41.0 22 37.66970866970867 39.0 35.0 41.0 33.0 41.0 23 37.53173628173628 39.0 35.0 41.0 33.0 41.0 24 37.26696501696502 39.0 35.0 41.0 33.0 41.0 25 37.11432861432861 39.0 35.0 40.0 33.0 41.0 26 36.961594711594714 39.0 35.0 40.0 33.0 41.0 27 36.901992901992905 39.0 35.0 40.0 33.0 41.0 28 36.81054756054756 38.0 35.0 40.0 33.0 41.0 29 36.781531531531535 38.0 35.0 40.0 33.0 41.0 30 36.61024336024336 38.0 35.0 40.0 32.0 41.0 31 36.392964392964394 38.0 35.0 40.0 31.0 41.0 32 36.12540462540463 38.0 35.0 40.0 30.0 41.0 33 35.64903864903865 38.0 34.0 40.0 27.0 41.0 34 35.02039702039702 38.0 34.0 40.0 23.0 41.0 35 34.453765453765456 38.0 33.0 40.0 20.0 41.0 36 33.95538395538396 38.0 33.0 40.0 16.0 41.0 37 33.68967668967669 38.0 33.0 40.0 15.0 41.0 38 33.49807924807925 38.0 33.0 40.0 12.0 41.0 39 33.36018486018486 38.0 33.0 40.0 10.0 41.0 40 33.266731016731015 38.0 33.0 40.0 10.0 41.0 41 33.0994110994111 38.0 33.0 40.0 10.0 41.0 42 32.964626964626966 38.0 33.0 40.0 10.0 41.0 43 32.8515561015561 38.0 32.0 40.0 10.0 41.0 44 32.70952770952771 38.0 32.0 40.0 10.0 41.0 45 32.589524589524586 37.0 31.0 40.0 10.0 41.0 46 32.44270894270894 37.0 31.0 40.0 10.0 41.0 47 32.40755040755041 37.0 31.0 40.0 10.0 41.0 48 32.32689832689832 37.0 31.0 40.0 10.0 41.0 49 32.23311298311298 37.0 31.0 40.0 10.0 41.0 50 32.0969150969151 37.0 30.0 40.0 10.0 41.0 51 30.57037557037557 35.0 26.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 1.0 11 4.0 12 2.0 13 2.0 14 2.0 15 7.0 16 7.0 17 23.0 18 47.0 19 90.0 20 179.0 21 283.0 22 517.0 23 952.0 24 1675.0 25 2548.0 26 3269.0 27 3491.0 28 3215.0 29 2651.0 30 2604.0 31 2956.0 32 3546.0 33 5094.0 34 6551.0 35 8627.0 36 9863.0 37 16051.0 38 16746.0 39 11556.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.494832494832494 17.369642369642367 21.01127101127101 29.124254124254122 2 43.48991848991849 22.42989742989743 20.664170664170666 13.416013416013417 3 27.312702312702314 20.915720915720915 39.80928980928981 11.962286962286962 4 23.002223002223 21.330096330096328 40.9012909012909 14.766389766389768 5 19.24944424944425 32.898482898482904 34.443859443859445 13.408213408213406 6 19.690144690144688 30.08268008268008 38.96786396786397 11.259311259311259 7 38.097188097188095 41.06996606996607 18.312468312468315 2.5203775203775205 8 63.82161382161382 6.888381888381888 26.05105105105105 3.238953238953239 9 58.45325845325845 8.487383487383488 27.796302796302797 5.2630552630552625 10 29.30950430950431 24.405249405249403 34.20595920595921 12.079287079287079 11 22.39089739089739 23.434148434148433 39.96236496236496 14.212589212589213 12 20.785070785070786 20.932295932295933 43.55816855816856 14.724464724464726 13 17.77036777036777 21.723021723021724 44.51074451074451 15.995865995865996 14 15.206115206115205 23.76077376077376 44.20849420849421 16.824616824616825 15 15.248040248040247 23.363948363948364 46.431496431496434 14.956514956514958 16 17.466167466167466 23.668148668148667 43.373893373893374 15.491790491790491 17 17.28969228969229 23.04219804219804 42.780117780117784 16.887991887991888 18 16.575991575991576 23.8007488007488 43.67321867321867 15.95004095004095 19 17.593892593892594 24.255099255099253 42.387192387192385 15.763815763815764 20 18.77851877851878 23.61062361062361 43.25689325689326 14.353964353964354 21 18.545493545493546 23.825123825123825 43.051168051168055 14.57821457821458 22 17.66994266994267 22.315822315822313 42.97706797706798 17.037167037167038 23 16.93089193089193 23.749073749073748 43.39241839241839 15.927615927615927 24 16.803166803166803 22.883272883272884 43.79021879021879 16.52334152334152 25 16.72906672906673 24.686049686049685 41.95721695721696 16.627666627666628 26 15.83109083109083 24.64217464217464 42.994617994618 16.532116532116532 27 16.784641784641785 24.064974064974066 43.24811824811825 15.902265902265903 28 14.842439842439841 25.429000429000432 43.40606840606841 16.322491322491324 29 16.328341328341327 23.638898638898638 43.678093678093674 16.354666354666357 30 16.887016887016888 24.391599391599392 42.704067704067704 16.017316017316016 31 17.362817362817363 24.54954954954955 41.891891891891895 16.195741195741196 32 17.20974220974221 25.473850473850472 41.47556647556648 15.840840840840842 33 17.54026754026754 24.66947466947467 40.79209079209079 16.998166998166997 34 16.53991653991654 25.06922506922507 41.467766467766474 16.923091923091924 35 17.48079248079248 25.095550095550095 39.3032643032643 18.12039312039312 36 17.723567723567722 28.84150384150384 37.196287196287194 16.23864123864124 37 17.547092547092547 28.738153738153738 37.13193713193713 16.582816582816584 38 17.203892203892206 29.35825435825436 35.88588588588589 17.55196755196755 39 18.08919308919309 27.342927342927343 36.77703677703678 17.790842790842788 40 18.747318747318747 26.788151788151787 36.62298662298662 17.841542841542843 41 16.85874185874186 27.909402909402907 36.16473616473617 19.06711906711907 42 17.085917085917085 27.839202839202837 36.38508638508638 18.689793689793692 43 18.23739323739324 28.236028236028236 35.65578565578566 17.87079287079287 44 17.97219297219297 28.345228345228346 35.17706017706018 18.505518505518506 45 17.90881790881791 27.30880230880231 35.58948558948559 19.19289419289419 46 18.116493116493114 27.92402792402792 35.33306033306033 18.626418626418626 47 17.118092118092118 27.57887757887758 37.22456222456223 18.07846807846808 48 16.58964158964159 27.21715221715222 37.26453726453726 18.92866892866893 49 17.05861705861706 27.28345228345228 37.00616200616201 18.651768651768652 50 16.176241176241177 26.919776919776922 37.440037440037436 19.463944463944465 51 16.81096681096681 25.33832533832534 36.577161577161576 21.273546273546273 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 129.0 1 220.0 2 311.0 3 4895.0 4 9479.0 5 6224.5 6 2970.0 7 2460.5 8 1951.0 9 1801.0 10 1651.0 11 1559.0 12 1467.0 13 1372.0 14 1277.0 15 1185.5 16 1094.0 17 1074.0 18 1054.0 19 1038.5 20 1023.0 21 1093.5 22 1164.0 23 1194.5 24 1225.0 25 1423.5 26 1812.0 27 2002.0 28 2212.0 29 2422.0 30 2583.0 31 2744.0 32 3009.0 33 3274.0 34 3505.0 35 3736.0 36 3758.0 37 3780.0 38 3947.5 39 4115.0 40 4339.5 41 4564.0 42 4847.0 43 5130.0 44 5423.5 45 5717.0 46 6410.0 47 7103.0 48 6577.0 49 6051.0 50 5658.0 51 5265.0 52 4663.5 53 4062.0 54 3738.0 55 3414.0 56 3249.0 57 3084.0 58 2910.5 59 2737.0 60 2528.5 61 2320.0 62 2030.0 63 1740.0 64 1423.0 65 1106.0 66 882.5 67 659.0 68 556.0 69 453.0 70 364.5 71 276.0 72 209.0 73 142.0 74 126.5 75 86.0 76 61.0 77 45.0 78 29.0 79 20.5 80 12.0 81 17.0 82 22.0 83 15.0 84 8.0 85 6.0 86 4.0 87 3.0 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 102564.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.03611403611403 #Duplication Level Percentage of deduplicated Percentage of total 1 80.22930052681264 51.37572637572637 2 10.243917293462042 13.119613119613119 3 4.244952647766375 8.154908154908155 4 2.2990955875635675 5.889005889005889 5 1.1982703492798197 3.8366288366288366 6 0.6562319193641707 2.5213525213525214 7 0.37150948567252357 1.6653016653016655 8 0.22381923931910228 1.1466011466011465 9 0.12028380888577607 0.6932256932256933 >10 0.3852127044063461 3.8541788541788544 >50 0.010658059015195348 0.4855504855504855 >100 0.01218063887450897 1.365001365001365 >500 0.0015225798593136212 0.7566007566007565 >1k 0.0030451597186272423 5.136305136305136 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3295 3.212628212628213 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1973 1.9236769236769238 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 776 0.7566007566007565 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 356 0.3471003471003471 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG 185 0.18037518037518038 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 165 0.16087516087516088 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC 163 0.15892515892515893 No Hit CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 145 0.14137514137514137 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG 143 0.13942513942513943 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC 136 0.1326001326001326 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC 107 0.10432510432510432 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.059475059475059475 0.0 2 0.0 0.0 0.0 0.24667524667524668 0.0 3 0.0 0.0 0.0 0.32565032565032564 0.0 4 0.0 0.0 0.0 0.42412542412542414 0.0 5 0.0 0.0 0.0 0.8102258102258102 0.0 6 0.0 0.0 0.0 1.014976014976015 0.0 7 0.0 0.0 0.0 1.2714012714012715 0.0 8 0.0 0.0 0.0 1.8525018525018524 0.0 9 0.0 0.0 0.0 2.0767520767520766 0.0 10 0.0 0.0 0.0 2.8782028782028783 0.0 11 0.0 0.0 0.0 3.495378495378495 0.0 12 0.0 0.0 0.0 4.27050427050427 0.0 13 0.0 0.0 0.0 4.515229515229516 0.0 14 0.0 0.0 0.0 4.633204633204633 0.0 15 0.0 0.0 0.0 4.8418548418548415 0.0 16 0.0 0.0 0.0 5.201630201630202 0.0 17 0.0 0.0 0.0 5.571155571155571 0.0 18 0.0 0.0 0.0 5.982605982605983 0.0 19 0.0 0.0 0.0 6.229281229281229 0.0 20 0.0 0.0 0.0 6.4603564603564605 0.0 21 0.0 0.0 0.0 6.775281775281775 0.0 22 0.0 0.0 0.0 7.051207051207051 0.0 23 0.0 0.0 0.0 7.39050739050739 0.0 24 0.0 0.0 0.0 7.663507663507663 0.0 25 0.0 0.0 0.0 7.923832923832924 0.0 26 0.0 0.0 0.0 8.151008151008151 0.0 27 0.0 0.0 0.0 8.403533403533404 0.0 28 0.0 0.0 0.0 8.662883662883663 0.0 29 0.0 0.0 0.0 8.938808938808938 0.0 30 0.0 0.0 0.0 9.222534222534222 0.0 31 0.0 0.0 0.0 9.492609492609493 0.0 32 0.0 0.0 0.0 9.75098475098475 0.0 33 0.0 0.0 0.0 10.013260013260012 0.0 34 0.0 0.0 0.0 10.278460278460278 0.0 35 0.0 0.0 0.0 10.561210561210562 0.0 36 0.0 0.0 0.0 10.844935844935845 0.0 37 0.0 0.0 0.0 11.1003861003861 0.0 38 0.0 0.0 0.0 11.425061425061426 0.0 39 0.0 0.0 0.0 11.721461721461722 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATT 280 0.0 45.000004 1 TACGAAT 35 1.1975135E-7 45.000004 12 CGAATAT 35 1.1975135E-7 45.000004 14 GCTACGA 35 1.1975135E-7 45.000004 10 TGACTAT 35 1.1975135E-7 45.000004 23 CGTTGTT 20 7.0032396E-4 45.0 1 AGGCGAT 40 6.710252E-9 45.0 7 TATGCCA 20 7.0032396E-4 45.0 10 ACGGGCA 25 3.8659222E-5 45.0 5 AACGGGC 25 3.8659222E-5 45.0 4 CGGGGAT 20 7.0032396E-4 45.0 6 ATGCGGG 20 7.0032396E-4 45.0 3 TGAGGAC 20 7.0032396E-4 45.0 5 AGGATGC 40 6.710252E-9 45.0 7 AGGATAC 25 3.8659222E-5 45.0 7 TGGGAGA 25 3.8659222E-5 45.0 6 GCATAGG 20 7.0032396E-4 45.0 3 TCGCATT 30 2.1461492E-6 44.999996 22 CGCATTT 30 2.1461492E-6 44.999996 23 AGGACTA 30 2.1461492E-6 44.999996 7 >>END_MODULE