SRR2936172.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936172.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	103385
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3291	3.183247086134352	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1832	1.7720172171978528	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	763	0.7380180877303284	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	356	0.34434395705373116	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	241	0.23310925182570005	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	205	0.19828795279779465	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	182	0.17604101175218842	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	175	0.16927020360787348	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	154	0.14895777917492867	No Hit
GAATCTATCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	117	0.11316922184069254	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	108	0.1044638970837162	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	30	2.146313E-6	45.000004	13
ACGCCGG	30	2.146313E-6	45.000004	27
CAACGAG	35	1.1976408E-7	45.000004	14
CACGCCG	30	2.146313E-6	45.000004	26
GTAGGAT	35	1.1976408E-7	45.000004	33
TGAAACG	30	2.146313E-6	45.000004	4
AACGAGC	30	2.146313E-6	45.000004	15
CGGTAGT	30	2.146313E-6	45.000004	12
ATGGGAT	20	7.003494E-4	45.0	5
CGTATGG	20	7.003494E-4	45.0	2
CGGTTTA	25	3.8661325E-5	45.0	1
TATGGGT	20	7.003494E-4	45.0	4
TATGGGA	25	3.8661325E-5	45.0	4
AGGGTTC	20	7.003494E-4	45.0	7
CAATTAA	20	7.003494E-4	45.0	32
CTACGGG	20	7.003494E-4	45.0	3
CTACGAA	25	3.8661325E-5	45.0	11
GGAACAC	40	6.712071E-9	45.0	8
CGAATAT	25	3.8661325E-5	45.0	14
GCGATGA	20	7.003494E-4	45.0	9