##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936170.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 116836 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.309895922489645 31.0 31.0 34.0 28.0 34.0 2 31.467501455030984 31.0 31.0 34.0 30.0 34.0 3 30.571056866034443 31.0 30.0 34.0 26.0 34.0 4 34.844945051182854 35.0 35.0 37.0 32.0 37.0 5 31.438794549625115 35.0 35.0 37.0 0.0 37.0 6 33.49365777671266 35.0 35.0 37.0 17.0 37.0 7 21.48818001300969 32.0 0.0 37.0 0.0 37.0 8 28.40485809168407 35.0 17.0 37.0 17.0 37.0 9 34.70860864801945 37.0 32.0 39.0 28.0 39.0 10 35.95256598993461 37.0 35.0 39.0 32.0 39.0 11 36.4380156800986 37.0 35.0 39.0 32.0 39.0 12 36.94297134444863 39.0 37.0 39.0 33.0 39.0 13 36.80103735150125 39.0 37.0 39.0 33.0 39.0 14 38.223492759081104 40.0 37.0 41.0 34.0 41.0 15 38.312164059022905 40.0 38.0 41.0 34.0 41.0 16 38.330951076722926 40.0 38.0 41.0 34.0 41.0 17 38.26982265740012 40.0 37.0 41.0 34.0 41.0 18 38.05143962477319 39.0 37.0 40.0 33.0 41.0 19 37.83835461672772 39.0 37.0 40.0 33.0 41.0 20 37.6431921667979 39.0 35.0 40.0 33.0 41.0 21 37.53706905405868 39.0 35.0 40.0 33.0 41.0 22 37.42960217741107 39.0 35.0 40.0 33.0 41.0 23 37.29733130199596 39.0 35.0 40.0 33.0 41.0 24 37.04565373686193 38.0 35.0 40.0 33.0 41.0 25 36.92352528330309 38.0 35.0 40.0 32.0 41.0 26 36.77637029682632 38.0 35.0 40.0 32.0 41.0 27 36.71970111951796 38.0 35.0 40.0 32.0 41.0 28 36.653574240816184 38.0 35.0 40.0 32.0 41.0 29 36.61410010613167 38.0 35.0 40.0 32.0 41.0 30 36.361617994453766 38.0 35.0 40.0 31.0 41.0 31 36.18496867403882 38.0 35.0 40.0 30.0 41.0 32 35.916001917217294 38.0 35.0 40.0 30.0 41.0 33 35.39372282515663 38.0 34.0 40.0 25.0 41.0 34 34.90941148276216 38.0 33.0 40.0 24.0 41.0 35 34.23716149132117 38.0 33.0 40.0 20.0 41.0 36 33.62936081344791 38.0 33.0 40.0 15.0 41.0 37 33.34068266630148 38.0 33.0 40.0 15.0 41.0 38 33.12923242836112 38.0 32.0 40.0 12.0 41.0 39 33.00540929165668 38.0 32.0 40.0 10.0 41.0 40 32.9263069601835 38.0 32.0 40.0 10.0 41.0 41 32.67571638878428 38.0 31.0 40.0 10.0 41.0 42 32.4582149337533 37.0 31.0 40.0 10.0 41.0 43 32.24119278304632 37.0 30.0 40.0 10.0 41.0 44 32.0873360950392 37.0 30.0 40.0 9.0 41.0 45 32.03151425930364 37.0 30.0 40.0 9.0 41.0 46 31.77472696771543 37.0 29.0 40.0 8.0 41.0 47 31.614630764490396 37.0 28.0 40.0 8.0 41.0 48 31.39057311102742 36.0 27.0 40.0 8.0 41.0 49 31.19885994042932 36.0 27.0 40.0 8.0 41.0 50 30.976514088123523 36.0 26.0 40.0 8.0 41.0 51 28.950657331644358 34.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 4.0 11 3.0 12 1.0 13 1.0 14 1.0 15 5.0 16 10.0 17 21.0 18 37.0 19 123.0 20 210.0 21 417.0 22 749.0 23 1218.0 24 2177.0 25 3292.0 26 4002.0 27 3921.0 28 3657.0 29 3427.0 30 3472.0 31 3973.0 32 4835.0 33 6334.0 34 7952.0 35 10198.0 36 12081.0 37 17926.0 38 16561.0 39 10224.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.991235578075255 18.751925776301825 22.107911944948473 25.14892670067445 2 39.671847718169055 24.452223629703173 21.9761032558458 13.899825396281967 3 24.82197267965353 23.57749323838543 38.435071382108255 13.165462699852784 4 21.81262624533534 22.40918894861173 41.676366873224005 14.101817932828922 5 18.526823924132973 32.80838097846554 34.41918586736964 14.245609230031839 6 19.03094936492177 30.866342565647575 38.77144030949365 11.331267759937006 7 39.1497483652299 40.47896196377829 17.328563114108665 3.0427265568831525 8 65.54486630832962 6.513403403060701 23.465370262590298 4.476360026019377 9 61.367215584237734 7.1373549248519295 24.633674552363996 6.861754938546339 10 28.189941456400426 25.49556643500291 33.21493375329522 13.099558355301449 11 19.382724502721764 23.797459687082746 39.853298640829884 16.966517169365606 12 18.296586668492587 20.366154267520283 44.685713307542194 16.651545756444932 13 16.981067479201617 23.204320586120716 45.28398781197576 14.530624122701907 14 15.761409154712588 26.16145708514499 41.03272963812524 17.044404122017188 15 14.517785614023074 25.26276147762676 45.79838405970762 14.421068848642541 16 15.654421582388988 24.855352802218494 41.80132835769797 17.688897257694546 17 16.07210106474032 24.94265466123455 40.65870108528193 18.326543188743198 18 16.690917183060016 24.66791057550755 42.16166250128385 16.479509740148586 19 15.537163203122326 26.888972576945463 39.888390564552026 17.68547365538019 20 16.32630353658119 26.396829744256905 41.69177308363861 15.585093635523299 21 16.123455099455647 26.512376322366393 41.85781779588483 15.50635078229313 22 15.46355575336369 23.467082063747473 40.44044643774179 20.628915745147044 23 14.353452702934028 25.41682358177274 41.485501044198706 18.744222671094526 24 16.465815330891164 23.714437330959637 41.212468759628884 18.60727857852032 25 14.32349618268342 28.09408059159848 39.438186860214316 18.144236365503783 26 15.431887431955904 25.571741586497314 40.84357561025711 18.15279537128967 27 16.026738334075112 26.840186243965903 39.77712348933548 17.355951932623505 28 14.029066383648875 25.65818754493478 42.010168098873635 18.30257797254271 29 17.39532335923859 23.685336711287615 39.80194460611455 19.117395323359236 30 15.804204183642028 27.393098017734257 40.048443972748125 16.754253825875587 31 17.392755657502825 27.330617275497275 37.16833852579685 18.108288541203056 32 17.546817761648807 26.70324215139169 37.39771988085864 18.35222020610086 33 15.797356979013319 25.323530418706564 39.50580300592283 19.373309596357288 34 18.296586668492587 25.118970180423844 37.6989968845219 18.885446266561676 35 18.080043822109623 25.532370159882227 36.91328015337738 19.474305864630765 36 18.758772980930534 27.33404087781163 37.259063987127256 16.648122154130576 37 17.09832585846828 27.764558868841792 37.39857578143722 17.7385394912527 38 16.514601663870724 28.162552637885586 35.83484542435551 19.488000273888183 39 19.340785374370913 25.329521722756688 36.39203670101681 18.937656201855592 40 20.92762504707453 24.34266835564381 36.233695093977886 18.496011503303777 41 19.347632578999622 26.290698072511898 34.709336163511246 19.652333184977234 42 19.250059913040502 25.886712999417988 36.090759697353555 18.772467390187956 43 18.591872368105722 27.055873189770274 34.91389640179397 19.438358040330037 44 17.689753158273135 26.49525831079462 34.20949022561539 21.605498305316853 45 18.490876099832242 25.25420247184087 33.68653497209764 22.568386456229245 46 20.48255674620836 26.383991235578076 33.535040569687425 19.59841144852614 47 17.72826868430963 25.59485090211921 37.10928138587421 19.567599027696943 48 18.21014071005512 25.20028073538978 35.382929918860626 21.206648635694478 49 18.021842582765586 23.6639391968229 37.43965900920949 20.874559211202026 50 17.60673080215002 23.487623677633607 36.26536341538567 22.640282104830703 51 18.03896059433736 23.432846040603923 34.23602314355165 24.29217022150707 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 577.0 1 506.5 2 436.0 3 3516.0 4 6596.0 5 4583.0 6 2570.0 7 2214.0 8 1858.0 9 1816.5 10 1775.0 11 1728.0 12 1681.0 13 1599.5 14 1518.0 15 1420.0 16 1322.0 17 1284.0 18 1246.0 19 1182.0 20 1118.0 21 1074.0 22 1030.0 23 1022.5 24 1015.0 25 1170.0 26 1442.5 27 1560.0 28 1762.0 29 1964.0 30 2261.0 31 2558.0 32 2825.5 33 3093.0 34 3509.0 35 3925.0 36 4393.0 37 4861.0 38 5045.5 39 5230.0 40 5741.5 41 6253.0 42 6944.0 43 7635.0 44 8713.0 45 9791.0 46 11172.5 47 12554.0 48 11482.0 49 10410.0 50 9539.5 51 8669.0 52 7003.0 53 5337.0 54 4281.5 55 3226.0 56 2657.0 57 2088.0 58 1804.0 59 1520.0 60 1232.0 61 944.0 62 740.0 63 536.0 64 409.0 65 282.0 66 204.0 67 126.0 68 114.0 69 102.0 70 74.0 71 46.0 72 37.5 73 29.0 74 18.5 75 9.5 76 11.0 77 6.5 78 2.0 79 1.5 80 1.0 81 2.0 82 3.0 83 3.0 84 3.0 85 1.5 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 116836.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.845218939368 #Duplication Level Percentage of deduplicated Percentage of total 1 84.48207270376449 58.16186791742272 2 8.411656472226365 11.582046629463521 3 3.1826545327962608 6.573316443561916 4 1.5503008603113033 4.2692320860008905 5 0.9150131781789248 3.1497141292067514 6 0.491073648615048 2.028484371255435 7 0.32448157541399375 1.5637303570817214 8 0.1578895022129395 0.8695949878462117 9 0.11561987169923915 0.7163887842788182 >10 0.3282112486946143 3.5964942312301003 >50 0.01864836640310309 0.88500119826081 >100 0.01864836640310309 2.9117737683590676 >500 0.0012432244268735391 0.4536273066520593 >1k 0.0024864488537470783 3.238727789379986 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2434 2.083262008285118 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1350 1.155465781094868 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 530 0.4536273066520593 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 473 0.40484097367249827 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCG 428 0.3663254476360026 No Hit GAATCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTC 379 0.3243863192851518 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 296 0.25334657126228216 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCG 287 0.24564346605498305 No Hit GAATCTATCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTC 272 0.23280495737615117 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGC 238 0.20370433770413227 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGC 181 0.1549180047245712 No Hit GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC 156 0.1335204902598514 No Hit CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC 131 0.11212297579513164 No Hit CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 130 0.11126707521654286 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1549180047245712 0.0 2 0.0 0.0 0.0 0.7275154918004725 0.0 3 0.0 0.0 0.0 0.9483378410763805 0.0 4 0.0 0.0 0.0 1.27443596151871 0.0 5 0.0 0.0 0.0 2.357150193433531 0.0 6 0.0 0.0 0.0 2.9562805984456846 0.0 7 0.0 0.0 0.0 3.703481803553699 0.0 8 0.0 0.0 0.0 5.093464343181896 0.0 9 0.0 0.0 0.0 5.60700469033517 0.0 10 0.0 0.0 0.0 7.546475401417371 0.0 11 0.0 0.0 0.0 9.066554828991064 0.0 12 0.0 0.0 0.0 10.602040466979355 0.0 13 0.0 0.0 0.0 11.0950392002465 0.0 14 0.0 0.0 0.0 11.318429251258173 0.0 15 0.0 0.0 0.0 11.737820534766682 0.0 16 0.0 0.0 0.0 12.583450306412407 0.0 17 0.0 0.0 0.0 13.638775719812386 0.0 18 0.0 0.0 0.0 14.742887466191927 0.0 19 0.0 0.0 0.0 15.451573145263445 0.0 20 0.0 0.0 0.0 16.07038926358314 0.0 21 0.0 0.0 0.0 16.84412338662741 0.0 22 0.0 0.0 0.0 17.70087986579479 0.0 23 0.0 0.0 0.0 18.644938203978224 0.0 24 0.0 0.0 0.0 19.232941901468724 0.0 25 0.0 0.0 0.0 19.826936903009347 0.0 26 0.0 0.0 0.0 20.394398986613716 0.0 27 0.004279502892943956 0.0 0.0 20.949022561539252 0.0 28 0.005135403471532747 0.0 0.0 21.493375329521722 0.0 29 0.005135403471532747 0.0 0.0 22.065116916019036 0.0 30 0.005135403471532747 0.0 0.0 22.689068437810263 0.0 31 0.005135403471532747 0.0 0.0 23.268513129514876 0.0 32 0.005135403471532747 0.0 0.0 23.893320551884692 0.0 33 0.005135403471532747 0.0 0.0 24.464206237803417 0.0 34 0.005135403471532747 0.0 0.0 25.017118011571775 0.0 35 0.005135403471532747 0.0 0.0 25.590571399226267 0.0 36 0.005135403471532747 0.0 0.0 26.136635968365916 0.0 37 0.005135403471532747 0.0 0.0 26.67842103461262 0.0 38 0.005135403471532747 0.0 0.0 27.25786572631723 0.0 39 0.005135403471532747 0.0 0.0 27.834742716286076 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTGGGA 35 1.1994416E-7 45.000004 4 ACGTCTC 30 2.148734E-6 45.000004 34 ATAACGT 30 2.148734E-6 45.000004 31 TGATGGG 30 2.148734E-6 45.000004 3 AATAACG 30 2.148734E-6 45.000004 30 TTTAGGT 20 7.007261E-4 45.0 4 ATGGGCG 20 7.007261E-4 45.0 5 GGTGTGA 20 7.007261E-4 45.0 8 GGCACTA 25 3.869248E-5 45.0 8 TACGGCT 25 3.869248E-5 45.0 7 TGAAACG 20 7.007261E-4 45.0 4 CGTTATT 195 0.0 45.0 1 AAACGGC 20 7.007261E-4 45.0 6 AACGGCT 20 7.007261E-4 45.0 7 AGGCACC 25 3.869248E-5 45.0 7 GAAACGG 20 7.007261E-4 45.0 5 TAGGCAC 20 7.007261E-4 45.0 6 TCGAAAG 20 7.007261E-4 45.0 1 CCACAGG 25 3.869248E-5 45.0 3 CGTTTTA 460 0.0 44.02174 1 >>END_MODULE