SRR2936161.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936161.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	281545
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1048	0.3722317924310501	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	521	0.18505034719139035	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	383	0.13603509208119482	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	377	0.13390399403292547	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	346	0.12289332078353372	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	329	0.11685520964677049	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	291	0.10335825534106449	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	20	7.024203E-4	45.0	4
CATATGC	20	7.024203E-4	45.0	33
GTCGACG	20	7.024203E-4	45.0	10
GGTCGAA	20	7.024203E-4	45.0	6
TTTACGG	25	3.883278E-5	45.0	2
CACGGGC	20	7.024203E-4	45.0	4
ATTACGG	20	7.024203E-4	45.0	2
CGACAAG	20	7.024203E-4	45.0	2
GCACCGA	55	1.8189894E-12	45.0	9
CTGGTAA	20	7.024203E-4	45.0	14
GCCGATA	25	3.883278E-5	45.0	9
CGAATAT	35	1.2075543E-7	45.0	14
CTACCGC	20	7.024203E-4	45.0	22
TAGGACG	20	7.024203E-4	45.0	6
CGTCACG	20	7.024203E-4	45.0	36
TCGGTCA	20	7.024203E-4	45.0	32
ACCTTCG	20	7.024203E-4	45.0	28
CTGGACG	20	7.024203E-4	45.0	1
TACCGCC	20	7.024203E-4	45.0	23
TCACGTC	20	7.024203E-4	45.0	38