##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936161.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 281545 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00710721199098 33.0 31.0 34.0 30.0 34.0 2 32.201917988243444 33.0 31.0 34.0 30.0 34.0 3 32.068315899767356 33.0 31.0 34.0 30.0 34.0 4 35.8275408904438 37.0 35.0 37.0 35.0 37.0 5 32.08177733577226 37.0 35.0 37.0 0.0 37.0 6 33.96697153208191 37.0 35.0 37.0 19.0 37.0 7 20.732476158340585 32.0 0.0 37.0 0.0 37.0 8 28.04951251132146 35.0 17.0 37.0 17.0 37.0 9 34.75545294713101 37.0 32.0 39.0 31.0 39.0 10 36.27574988012574 37.0 35.0 39.0 32.0 39.0 11 36.69860590669342 38.0 35.0 39.0 33.0 39.0 12 37.01088991102666 39.0 37.0 39.0 34.0 39.0 13 36.82786055515104 39.0 37.0 39.0 33.0 39.0 14 38.23996519206521 40.0 38.0 41.0 34.0 41.0 15 38.43347599850823 40.0 38.0 41.0 34.0 41.0 16 38.48474666571951 40.0 38.0 41.0 34.0 41.0 17 38.45828553162017 40.0 38.0 41.0 34.0 41.0 18 38.37419950629562 40.0 38.0 41.0 34.0 41.0 19 38.327961782308336 40.0 37.0 41.0 34.0 41.0 20 38.27646734980198 40.0 37.0 41.0 34.0 41.0 21 38.20063932941448 40.0 37.0 41.0 34.0 41.0 22 38.163398391020976 40.0 37.0 41.0 34.0 41.0 23 38.136013781100715 40.0 37.0 41.0 34.0 41.0 24 38.02594967056776 40.0 36.0 41.0 34.0 41.0 25 37.88332593368733 40.0 36.0 41.0 33.0 41.0 26 37.73061499937843 40.0 36.0 41.0 33.0 41.0 27 37.70163916958213 40.0 36.0 41.0 33.0 41.0 28 37.584144630520875 40.0 36.0 41.0 33.0 41.0 29 37.56604095260083 40.0 36.0 41.0 33.0 41.0 30 37.42745209469179 40.0 36.0 41.0 33.0 41.0 31 37.33648617450141 40.0 36.0 41.0 33.0 41.0 32 37.24467491875189 40.0 35.0 41.0 32.0 41.0 33 37.120573975741 40.0 35.0 41.0 32.0 41.0 34 36.982951215613845 40.0 35.0 41.0 31.0 41.0 35 36.882786055515105 40.0 35.0 41.0 31.0 41.0 36 36.7360528512316 39.0 35.0 41.0 31.0 41.0 37 36.61936457759861 39.0 35.0 41.0 30.0 41.0 38 36.537565930845865 39.0 35.0 41.0 30.0 41.0 39 36.45730522651797 39.0 35.0 41.0 30.0 41.0 40 36.325734784847896 39.0 35.0 41.0 30.0 41.0 41 36.27274148004759 39.0 35.0 41.0 30.0 41.0 42 36.15598572164308 39.0 35.0 40.0 29.0 41.0 43 36.066365945053185 39.0 35.0 40.0 29.0 41.0 44 35.91031984229875 39.0 35.0 40.0 28.0 41.0 45 35.80513949812641 39.0 35.0 40.0 28.0 41.0 46 35.68501305297555 39.0 35.0 40.0 27.0 41.0 47 35.621953861727256 38.0 35.0 40.0 27.0 41.0 48 35.57464703688576 38.0 35.0 40.0 27.0 41.0 49 35.456463442788895 38.0 34.0 40.0 27.0 41.0 50 35.31953328952743 38.0 34.0 40.0 26.0 41.0 51 33.54255980393898 36.0 32.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 17.0 10 17.0 11 12.0 12 9.0 13 7.0 14 15.0 15 12.0 16 33.0 17 51.0 18 105.0 19 164.0 20 287.0 21 479.0 22 764.0 23 1187.0 24 1712.0 25 2420.0 26 3074.0 27 3419.0 28 3888.0 29 4493.0 30 5434.0 31 6944.0 32 9224.0 33 13639.0 34 19181.0 35 24511.0 36 30380.0 37 53268.0 38 58053.0 39 38733.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.438651014935445 20.668454421140492 25.351897565220483 13.540996998703584 2 32.447033333925305 26.172725496812234 25.16968868209345 16.210552487169014 3 31.98067804436236 24.50443090802536 27.631106927844574 15.88378411976771 4 29.056456339128733 26.02887637855405 26.803175336091922 18.111491946225293 5 23.12951748388357 38.03015503738301 22.68838018789181 16.151947290841605 6 25.594487559715144 36.06918964996715 24.793549876573906 13.542772913743805 7 47.37395443002006 44.02990640927738 5.767106501624962 2.8290326590775896 8 81.52728693459305 7.1139604681312045 8.21502779307038 3.143724804205367 9 74.82818021985828 9.757942780017403 10.21115629828269 5.202720701841624 10 41.17707648866078 29.42975368058392 16.909907830009413 12.483262000745885 11 32.624980020955796 25.517768029977443 25.672627821485023 16.18462412758174 12 29.800564740982793 24.835461471523203 28.642668134756434 16.721305652737573 13 23.765295068283933 26.688806407501463 30.13656786659326 19.40933065762134 14 19.166030297110588 30.976930863627484 29.012768829139212 20.844270010122713 15 19.538972455557726 27.374309613028114 34.35543163615053 18.731286295263637 16 22.04123674723401 26.200429771439733 32.617521177786855 19.1408123035394 17 21.717309843897066 26.709051838960026 29.41199453018168 22.161643786961232 18 22.344563036104354 28.054485073434087 29.709993073931347 19.890958816530215 19 25.109662753733865 27.05286899074748 27.793780745529133 20.04368750998952 20 25.556127794846294 26.7491875188691 30.175282814470155 17.519401871814452 21 24.09170825267719 28.037436289047935 28.990392299632383 18.880463158642492 22 23.335878811557656 26.642277433447585 29.141700261059512 20.88014349393525 23 23.447761459091797 27.214832442415954 29.44928874602639 19.88811735246586 24 22.432293239091443 26.307695039869294 31.38006357775844 19.879948143280828 25 21.859383047115024 28.23172139444849 29.60734518460637 20.301550373830114 26 21.468326555257597 29.800919923990836 28.278605551510417 20.452147969241153 27 21.928998916691825 29.905343728356037 29.391038732707024 18.77461862224511 28 20.49121810012609 28.96233284199684 31.11012449164432 19.436324566232752 29 21.698485144470688 27.527748672503506 30.283258448915806 20.49050773411 30 21.00126089967856 29.62936653110515 29.943348310216837 19.42602425899945 31 23.894581683212277 28.122325027970664 28.121614661954574 19.861478626862493 32 24.099167095846134 28.798948658296187 27.86623807917029 19.23564616668739 33 21.987959296027277 30.076897121241718 27.56433252233213 20.37081106039887 34 21.528352483617184 28.996075227761104 29.590651583228254 19.884920705393455 35 23.66761974107159 27.838178621534748 27.644603882150275 20.84959775524339 36 23.347244667815094 29.606634818590276 27.759327993748776 19.28679251984585 37 22.191479159637005 30.738958248237402 28.595428794686462 18.47413379743913 38 21.075849331367987 30.301017599318048 28.5371787813671 20.085954287946866 39 23.59445204141434 28.04098811912838 28.22852474737609 20.136035092081194 40 22.541334422561224 28.734305350832017 29.1740219147916 19.550338311815164 41 20.973201442043013 28.172405832104992 29.64215311939477 21.212239606457228 42 21.09112220071392 28.061943916603028 29.203857287467365 21.643076595215685 43 22.396419755278906 27.973148164591805 28.731463886767656 20.89896819336163 44 21.771297661119892 29.43081922960806 27.460619083983023 21.33726402528903 45 21.483954607611572 29.93020653891918 27.090518389600245 21.495320463869007 46 21.545046084995295 31.425527002788183 26.28780479141878 20.74162212079774 47 21.597257987177894 28.47289065691097 30.055230957750982 19.874620398160154 48 21.66438757569838 27.37857180912465 29.89859525120318 21.05844536397379 49 20.479852243868653 28.04525031522492 30.2523575272159 21.22253991369053 50 19.71194658047559 29.583192740059317 29.892557140066415 20.812303539398673 51 20.597417819531515 28.674634605480477 27.834626791454298 22.893320783533717 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 201.0 1 564.5 2 928.0 3 2049.5 4 3171.0 5 2240.0 6 1309.0 7 1171.0 8 1033.0 9 972.0 10 911.0 11 876.5 12 842.0 13 900.0 14 958.0 15 977.5 16 997.0 17 957.5 18 918.0 19 1056.5 20 1195.0 21 1719.5 22 2244.0 23 2323.5 24 2403.0 25 3144.5 26 4231.5 27 4577.0 28 5243.5 29 5910.0 30 7079.0 31 8248.0 32 9096.0 33 9944.0 34 10473.5 35 11003.0 36 11635.0 37 12267.0 38 13584.5 39 14902.0 40 16335.0 41 17768.0 42 18210.0 43 18652.0 44 19176.5 45 19701.0 46 19920.0 47 20139.0 48 19383.0 49 18627.0 50 17675.5 51 16724.0 52 15291.5 53 13859.0 54 13031.0 55 12203.0 56 12085.5 57 11968.0 58 11665.5 59 11363.0 60 10720.5 61 10078.0 62 9061.5 63 8045.0 64 6602.0 65 5159.0 66 4334.0 67 3509.0 68 2892.0 69 2275.0 70 1898.0 71 1521.0 72 1218.0 73 915.0 74 732.5 75 434.5 76 319.0 77 231.5 78 144.0 79 111.0 80 78.0 81 58.0 82 38.0 83 29.0 84 20.0 85 17.0 86 14.0 87 13.0 88 12.0 89 11.0 90 10.0 91 6.5 92 3.0 93 3.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 281545.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.88355325081248 #Duplication Level Percentage of deduplicated Percentage of total 1 67.54120671404809 22.209948676055337 2 7.98427340087706 5.25102559093573 3 4.410144520533149 4.35063666554192 4 3.0977943876779506 4.0746594682910375 5 2.4345985180704672 4.002912500665968 6 1.9701453846320018 3.8871228400433324 7 1.619105225637813 3.7269353034150847 8 1.492730768399905 3.9269033369443602 9 1.3371929748763258 3.9574490756362213 >10 8.020997602125684 40.6819513754462 >50 0.05508630187293427 1.249533822301941 >100 0.03456395411635091 2.123639205100428 >500 0.001080123566135966 0.18505034719139035 >1k 0.001080123566135966 0.3722317924310501 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1048 0.3722317924310501 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 521 0.18505034719139035 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 383 0.13603509208119482 No Hit CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA 377 0.13390399403292547 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 346 0.12289332078353372 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 329 0.11685520964677049 No Hit GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA 291 0.10335825534106449 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.021666163490738605 0.0 2 0.0 0.0 0.0 0.11188264753414197 0.0 3 0.0 0.0 0.0 0.1381661901294642 0.0 4 0.0 0.0 0.0 0.18576071320748017 0.0 5 0.0 0.0 0.0 0.39922570104246213 0.0 6 0.0 0.0 0.0 0.484469622973237 0.0 7 0.0 0.0 0.0 0.5942211724591095 0.0 8 0.0 0.0 0.0 0.8155001864710792 0.0 9 0.0 0.0 0.0 0.8893782521444175 0.0 10 0.0 0.0 0.0 1.2704896197765898 0.0 11 0.0 0.0 0.0 1.537942424834396 0.0 12 0.0 0.0 0.0 1.9076879362091317 0.0 13 0.0 0.0 0.0 2.0142428386226 0.0 14 0.0 0.0 0.0 2.062902910724751 0.0 15 0.0 0.0 0.0 2.1595126889129626 0.0 16 0.0 0.0 0.0 2.3285798007423324 0.0 17 0.0 0.0 0.0 2.5178923440302614 0.0 18 0.0 0.0 0.0 2.72673995276066 0.0 19 0.0 0.0 0.0 2.8641957768740345 0.0 20 0.0 0.0 0.0 2.990285744729972 0.0 21 0.0 0.0 0.0 3.170363529808734 0.0 22 0.0 0.0 0.0 3.331616615461116 0.0 23 0.0 0.0 0.0 3.492514518105454 0.0 24 0.0 0.0 0.0 3.6555435187980607 0.0 25 0.0 0.0 0.0 3.793709708927525 0.0 26 0.0 0.0 0.0 3.9102097355662506 0.0 27 0.0 0.0 0.0 4.053348487808344 0.0 28 0.0 0.0 0.0 4.200749436146975 0.0 29 0.0 0.0 0.0 4.3424674563568875 0.0 30 0.0 0.0 0.0 4.519348594363246 0.0 31 3.551830080448951E-4 0.0 0.0 4.70688522261095 0.0 32 3.551830080448951E-4 0.0 0.0 4.857482818021986 0.0 33 3.551830080448951E-4 0.0 0.0 5.016604805626099 0.0 34 3.551830080448951E-4 0.0 0.0 5.189223747535918 0.0 35 3.551830080448951E-4 0.0 0.0 5.368235983590545 0.0 36 3.551830080448951E-4 0.0 0.0 5.535882363387736 0.0 37 3.551830080448951E-4 0.0 0.0 5.731943383828518 0.0 38 3.551830080448951E-4 0.0 0.0 5.915572998987728 0.0 39 3.551830080448951E-4 0.0 0.0 6.108082189348061 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGGT 20 7.024203E-4 45.0 4 CATATGC 20 7.024203E-4 45.0 33 GTCGACG 20 7.024203E-4 45.0 10 GGTCGAA 20 7.024203E-4 45.0 6 TTTACGG 25 3.883278E-5 45.0 2 CACGGGC 20 7.024203E-4 45.0 4 ATTACGG 20 7.024203E-4 45.0 2 CGACAAG 20 7.024203E-4 45.0 2 GCACCGA 55 1.8189894E-12 45.0 9 CTGGTAA 20 7.024203E-4 45.0 14 GCCGATA 25 3.883278E-5 45.0 9 CGAATAT 35 1.2075543E-7 45.0 14 CTACCGC 20 7.024203E-4 45.0 22 TAGGACG 20 7.024203E-4 45.0 6 CGTCACG 20 7.024203E-4 45.0 36 TCGGTCA 20 7.024203E-4 45.0 32 ACCTTCG 20 7.024203E-4 45.0 28 CTGGACG 20 7.024203E-4 45.0 1 TACCGCC 20 7.024203E-4 45.0 23 TCACGTC 20 7.024203E-4 45.0 38 >>END_MODULE