SRR2936160.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936160.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	354560
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5083	1.4336078519855597	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2853	0.8046592960288809	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCG	1132	0.31926895306859204	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTC	1128	0.31814079422382674	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1070	0.30178249097472926	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC	818	0.2307084837545126	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCG	751	0.21181182310469315	No Hit
GAATCTATCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTC	670	0.18896660649819494	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	546	0.1539936823104693	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC	540	0.1523014440433213	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTACC	35	1.2087548E-7	45.0	7
TGTTACG	20	7.0266804E-4	45.0	1
CGAATAT	95	0.0	45.0	14
CGGGACG	25	3.8853308E-5	45.0	6
GTTCCCT	20	7.0266804E-4	45.0	27
GCTAGCG	20	7.0266804E-4	45.0	1
TATAGCG	20	7.0266804E-4	45.0	1
CGTTATT	420	0.0	44.464287	1
CGTTTTA	1030	0.0	44.126213	1
CGGTTTA	120	0.0	43.125004	1
TACGAAT	100	0.0	42.75	12
GCTACGA	100	0.0	42.75	10
CGTTTTT	2005	0.0	42.531174	1
AAACGGC	70	0.0	41.785713	6
TACGGCT	120	0.0	41.250004	7
CTATGCT	100	0.0	40.5	36
ACGGCTG	185	0.0	40.135136	8
TACGGGA	135	0.0	40.0	4
ACGGGAT	175	0.0	39.857143	5
TGACGGG	85	0.0	39.705883	3