SRR2936154.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936154.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	508809
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7000	1.3757618281123172	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3994	0.7849703916400851	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1523	0.299326466316437	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	760	0.14936842705219444	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCG	512	0.10062715085621521	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.029575E-4	45.000004	4
CACGCAT	20	7.029575E-4	45.000004	10
GCGATAC	20	7.029575E-4	45.000004	9
AGTTACG	20	7.029575E-4	45.000004	26
CGTTTCA	20	7.029575E-4	45.000004	1
CTTCGTT	25	3.8877304E-5	45.0	31
TGCGATA	25	3.8877304E-5	45.0	1
CGTTTTA	1410	0.0	44.68085	1
CGTTTTT	2780	0.0	42.410072	1
CGTTATT	575	0.0	41.478264	1
TAGGCGA	105	0.0	40.714287	6
TACGGGA	145	0.0	40.344826	4
GTTTTAT	1680	0.0	40.17857	2
CGCGACC	45	1.9246727E-8	40.0	10
ATTAGGC	40	3.4531513E-7	39.375004	4
AGGCGAT	270	0.0	39.166664	7
TCGTCCC	325	0.0	38.76923	38
CGGGTGC	35	6.2414256E-6	38.57143	6
CTCCCGT	35	6.2414256E-6	38.57143	42
GAGCGAT	35	6.2414256E-6	38.57143	6