SRR2936146.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936146.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	346010
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2677	0.7736770613566082	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1444	0.4173289789312448	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	586	0.16935926707320598	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	582	0.16820323112048785	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	20	7.0264435E-4	45.000004	3
TCTTCGT	20	7.0264435E-4	45.000004	41
TTCGTCG	20	7.0264435E-4	45.000004	34
TGTGCGT	20	7.0264435E-4	45.000004	9
CGTTAAG	20	7.0264435E-4	45.000004	2
CGTAGTG	20	7.0264435E-4	45.000004	2
CGCTAGG	20	7.0264435E-4	45.000004	3
GAAACGT	20	7.0264435E-4	45.000004	41
GACGGGT	35	1.2086457E-7	45.000004	4
CTATTAG	20	7.0264435E-4	45.000004	2
CCGCGAA	20	7.0264435E-4	45.000004	26
TATGCGG	25	3.885136E-5	45.0	2
TTGCGCG	25	3.885136E-5	45.0	14
TAAGGTC	25	3.885136E-5	45.0	5
CGGTCTA	25	3.885136E-5	45.0	31
CGGACAG	30	2.1610886E-6	44.999996	2
TTGAGCG	30	2.1610886E-6	44.999996	1
ATCGCGG	30	2.1610886E-6	44.999996	2
CGTTTTA	545	0.0	43.34862	1
CGGTTTT	115	0.0	43.04348	1