SRR2936141.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936141.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	463909
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3365	0.7253577749084411	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2006	0.4324123912232787	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	733	0.15800512600531572	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	30	2.162691E-6	45.000004	1
TATCACG	20	7.0289325E-4	45.0	1
AGGACCG	45	3.8380676E-10	45.0	7
TGTTGCG	20	7.0289325E-4	45.0	1
TACCTAC	20	7.0289325E-4	45.0	32
CGCACGT	20	7.0289325E-4	45.0	27
CACGTTG	20	7.0289325E-4	45.0	29
CGGTAAG	20	7.0289325E-4	45.0	2
CGTTTTA	860	0.0	44.215115	1
CGTTATT	340	0.0	43.01471	1
AGGCGAT	200	0.0	42.75	7
GCTACGA	65	0.0	41.53846	10
ATAGCGG	90	0.0	40.0	2
TCTACGG	45	1.924127E-8	40.0	2
GAACGTC	40	3.4522782E-7	39.375	33
CGTTTTT	1775	0.0	39.16901	1
CCGATAA	35	6.240236E-6	38.571426	11
CTACGAA	70	0.0	38.571426	11
TCGACAC	35	6.240236E-6	38.571426	34
ATCGAAG	35	6.240236E-6	38.571426	2