SRR2936139.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936139.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	419365
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2116	0.5045723892074923	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	1990	0.47452696338511796	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG	1979	0.47190395001967256	No Hit
GAATCTATCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	1449	0.3455223969573045	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG	1331	0.3173846172188905	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1233	0.2940159526903771	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	1193	0.2844777222705758	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	894	0.21317944988256052	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	560	0.13353522587721914	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	495	0.11803560144504192	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT	488	0.11636641112157667	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	450	0.10730509222276537	No Hit
GCTGTCACTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	426	0.10158215397088455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAG	35	1.2094642E-7	45.000004	2
TATCACG	20	7.028156E-4	45.0	1
CAAACGC	25	3.886554E-5	45.0	18
CTCGTTT	20	7.028156E-4	45.0	18
GATCGTT	20	7.028156E-4	45.0	9
TTTACGG	20	7.028156E-4	45.0	2
CGCGGGT	20	7.028156E-4	45.0	4
CGAAAAT	25	3.886554E-5	45.0	35
CCAATTG	20	7.028156E-4	45.0	15
TTGTACG	25	3.886554E-5	45.0	1
TACGGGT	25	3.886554E-5	45.0	4
CGACACC	20	7.028156E-4	45.0	19
TATGCGT	20	7.028156E-4	45.0	19
GCGTTAC	20	7.028156E-4	45.0	22
TCGGCAC	20	7.028156E-4	45.0	18
CGTTACG	20	7.028156E-4	45.0	23
CCGTAGG	25	3.886554E-5	45.0	3
CGTAGGT	25	3.886554E-5	45.0	4
GCGGGTA	20	7.028156E-4	45.0	5
TTGGTCG	20	7.028156E-4	45.0	1