SRR2936135.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936135.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	496555
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2337	0.47064272839866683	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1417	0.285366172931498	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	642	0.12929081370643736	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	530	0.10673540695391247	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.8875936E-5	45.000004	1
TAGGTAA	35	1.2100645E-7	45.000004	6
CGTGACA	25	3.8875936E-5	45.000004	26
ACTTATC	35	1.2100645E-7	45.000004	45
TGCAACG	25	3.8875936E-5	45.000004	1
CGGCATC	20	7.029412E-4	45.0	33
CGCATCG	20	7.029412E-4	45.0	21
ACGATAG	20	7.029412E-4	45.0	2
CCCGTAG	20	7.029412E-4	45.0	39
CGGTCTA	45	3.8380676E-10	45.0	31
AATAGGT	45	3.8380676E-10	45.0	4
TGTTATC	65	0.0	44.999996	24
CGTTTTA	470	0.0	42.606384	1
AGGCGAT	305	0.0	41.311478	7
TAGCCGT	120	0.0	41.249996	44
TCACGAC	50	1.0786607E-9	40.500004	25
CGACGGT	50	1.0786607E-9	40.500004	28
CGAAGGC	45	1.9244908E-8	40.0	4
ATAGGCC	40	3.452933E-7	39.375	5
CTTAGGC	40	3.452933E-7	39.375	4