SRR2936126.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936126.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	224839
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCG	1023	0.45499223889093976	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGC	800	0.35581015749047096	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	781	0.3473596662500723	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	635	0.2824243125080613	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	557	0.2477328221527404	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	415	0.1845765191981818	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	390	0.1734574517766046	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	285	0.12675736860598028	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	278	0.12364402972793866	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	273	0.12142021624362322	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCGG	20	7.021168E-4	45.000004	2
CGGGTTC	20	7.021168E-4	45.000004	6
GTCATAA	20	7.021168E-4	45.000004	18
CGGGTAT	30	2.1576889E-6	45.000004	6
GGAGCGC	20	7.021168E-4	45.000004	8
ACTGCGG	20	7.021168E-4	45.000004	2
CATATTA	30	2.1576889E-6	45.000004	28
GGTCGTT	20	7.021168E-4	45.000004	8
CCTAGTC	20	7.021168E-4	45.000004	27
GACGTTG	20	7.021168E-4	45.000004	1
CCGGAGA	20	7.021168E-4	45.000004	16
ATTCGCA	20	7.021168E-4	45.000004	38
TACGGGC	20	7.021168E-4	45.000004	4
TGCGGAG	20	7.021168E-4	45.000004	1
CGTTATT	30	2.1576889E-6	45.000004	1
ATACTGG	20	7.021168E-4	45.000004	2
TACTGAC	20	7.021168E-4	45.000004	20
GCGGGTC	30	2.1576889E-6	45.000004	5
ATGACGG	20	7.021168E-4	45.000004	2
CAAGCCC	30	2.1576889E-6	45.000004	10