SRR2936125.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936125.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	320247
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC	1540	0.4808788216595315	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG	1309	0.4087469984106018	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC	809	0.25261751085880585	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	533	0.16643403373021448	RNA PCR Primer, Index 35 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	356	0.11116419513687871	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC	325	0.10148416690866736	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.2082637E-7	45.000004	4
TTAGCGG	25	3.8844813E-5	45.000004	2
CGGTTGA	20	7.0256554E-4	45.000004	33
GGCGTAT	20	7.0256554E-4	45.000004	9
ATTCGCG	20	7.0256554E-4	45.000004	1
CACGACC	35	1.2082637E-7	45.000004	27
CTAACGG	25	3.8844813E-5	45.000004	2
TGACCGG	30	2.1605792E-6	45.000004	2
TGTTCGA	30	2.1605792E-6	45.000004	34
CTTTGCG	20	7.0256554E-4	45.000004	1
GCCTATC	20	7.0256554E-4	45.000004	3
GGTGCGT	20	7.0256554E-4	45.000004	41
GCGGCCA	25	3.8844813E-5	45.000004	22
TACTACG	20	7.0256554E-4	45.000004	35
AAGTGCG	35	1.2082637E-7	45.000004	1
GCGTATT	20	7.0256554E-4	45.000004	10
TATGGGA	270	0.0	42.5	4
GTTGATG	65	0.0	41.538464	1
CGCATGG	60	3.6379788E-12	41.250004	2
AACGGGA	115	0.0	41.086956	4