SRR2936123.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936123.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	884995
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6508	0.7353713862790185	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1892	0.2137865185679015	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1386	0.1566110542997418	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC	1062	0.12000067796993202	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	997	0.11265600370623562	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	914	0.10327741964643869	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGCG	20	7.032405E-4	45.000004	10
GACGTCG	20	7.032405E-4	45.000004	19
CGACTAA	20	7.032405E-4	45.000004	10
TTCGACG	25	3.8900755E-5	45.0	1
TTACGGG	275	0.0	42.545456	3
CGAATAT	175	0.0	42.428574	14
CGTTATT	520	0.0	41.971153	1
CGTTTTT	2325	0.0	41.51613	1
CGGTCTA	50	1.0804797E-9	40.5	31
TACGAAT	190	0.0	40.263157	12
TAGTACG	45	1.9274012E-8	40.0	1
CGGTTTT	675	0.0	39.333332	1
CGTAGCG	35	6.246659E-6	38.57143	2
GTATACG	35	6.246659E-6	38.57143	1
ACGGGTA	165	0.0	38.181816	5
TACGGGA	380	0.0	37.894737	4
AATTGCG	30	1.1397097E-4	37.499996	1
CCGAACG	30	1.1397097E-4	37.499996	36
CGTTTTA	265	0.0	37.35849	1
CTACGAA	205	0.0	37.317074	11