SRR2936121.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936121.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347468
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCG	1424	0.409821911658052	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGC	1290	0.3712572092969712	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTC	1011	0.2909620454257658	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	738	0.21239365927222076	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	593	0.1706631977620961	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT	393	0.1131039405067517	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	35	1.2086639E-7	45.000004	28
CACGACG	35	1.2086639E-7	45.000004	26
CGGTCTA	35	1.2086639E-7	45.000004	31
ACAACGG	20	7.0264866E-4	45.0	2
GCGAAAC	20	7.0264866E-4	45.0	9
GACGTTA	20	7.0264866E-4	45.0	35
ACCGCAC	20	7.0264866E-4	45.0	41
GACCGCA	20	7.0264866E-4	45.0	40
CCTCGAG	20	7.0264866E-4	45.0	28
TAGCCGT	20	7.0264866E-4	45.0	44
AAACGGC	40	6.7921064E-9	45.0	6
TGACACG	20	7.0264866E-4	45.0	44
CACACGT	20	7.0264866E-4	45.0	32
CGACTGG	40	6.7921064E-9	45.0	2
CTTAGGC	20	7.0264866E-4	45.0	4
CCGCACG	20	7.0264866E-4	45.0	42
TAGCGCG	25	3.88517E-5	44.999996	1
CACGCAA	25	3.88517E-5	44.999996	45
CGACCCG	50	2.1827873E-11	44.999996	32
CACGTGA	25	3.88517E-5	44.999996	29