SRR2936118.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936118.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	465516
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG	2788	0.5989053007845058	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGC	2368	0.5086828379690495	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	2005	0.4307048522499764	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG	691	0.14843743287019137	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	686	0.14736335593191213	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	607	0.13039294030710008	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTT	551	0.11836327859837256	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGC	521	0.1119188169686971	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	517	0.11105955541807372	No Hit
GAATATGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	510	0.10955584770448276	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	95	0.0	45.0	4
TTCAGCG	20	7.0289575E-4	45.0	1
GATCCGT	20	7.0289575E-4	45.0	35
CGCGCCG	25	3.8872175E-5	45.0	37
ACGGGCG	35	1.2098462E-7	45.0	5
CGGGCTA	40	6.7993824E-9	45.0	6
CGAATAT	40	6.7993824E-9	45.0	14
TCATCGT	25	3.8872175E-5	45.0	13
CCAACGG	20	7.0289575E-4	45.0	2
ATACCGT	20	7.0289575E-4	45.0	43
AGTACGG	40	6.7993824E-9	45.0	2
CAGTCCG	30	2.1627093E-6	44.999996	15
TCGCGCG	30	2.1627093E-6	44.999996	1
AGTAACG	30	2.1627093E-6	44.999996	1
CGCCAAT	60	0.0	44.999996	11
AATACGG	105	0.0	42.857143	5
CGTAAGG	80	0.0	42.1875	2
AACGGCT	75	0.0	42.000004	7
ACGGCTG	605	0.0	40.537193	8
CGACGGG	95	0.0	40.263157	3