SRR2936117.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936117.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299034
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC	622	0.20800310332604316	TruSeq Adapter, Index 27 (96% over 25bp)
CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC	475	0.15884481363323233	TruSeq Adapter, Index 27 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT	343	0.11470267594989199	TruSeq Adapter, Index 27 (100% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	25	3.8838603E-5	45.0	1
CCGGGTC	25	3.8838603E-5	45.0	5
TCGCACA	20	7.0249074E-4	45.0	28
TTGGACG	20	7.0249074E-4	45.0	1
GGGTCGT	25	3.8838603E-5	45.0	8
TAGCGCG	20	7.0249074E-4	45.0	1
CCGGATA	20	7.0249074E-4	45.0	29
TGAACCA	20	7.0249074E-4	45.0	42
CCAGCGT	35	1.2078999E-7	45.0	14
TTCGTGA	20	7.0249074E-4	45.0	16
GTTAGCG	20	7.0249074E-4	45.0	1
TACGGGT	25	3.8838603E-5	45.0	4
ACGGGTC	25	3.8838603E-5	45.0	5
CGTTATT	40	6.7866495E-9	45.0	1
AGAGTCG	20	7.0249074E-4	45.0	36
TACGCAG	20	7.0249074E-4	45.0	1
TCGTGAC	20	7.0249074E-4	45.0	17
CGGATAT	20	7.0249074E-4	45.0	30
AGCATAC	20	7.0249074E-4	45.0	30
GTACTTC	20	7.0249074E-4	45.0	31