SRR2936110.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936110.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	832217
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG	3516	0.4224859621949564	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	2857	0.34329988452531013	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC	2757	0.3312837877620861	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1478	0.17759791016045093	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	964	0.1158351727974795	RNA PCR Primer, Index 27 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	35	1.2113924E-7	45.0	1
ATTACGG	55	1.8189894E-12	45.0	2
TACGGGT	135	0.0	45.0	4
TACGCTT	25	3.8898746E-5	45.0	18
GATTACG	25	3.8898746E-5	45.0	1
TCGAACG	35	1.2113924E-7	45.0	1
ACGGGTA	170	0.0	42.35294	5
CGGTCTA	50	1.0804797E-9	40.5	31
TACGGCT	520	0.0	39.80769	7
TAATACG	125	0.0	39.6	4
CACAACG	120	0.0	39.374996	12
CGATTAG	75	0.0	39.0	10
AGATCGG	35	6.2462113E-6	38.571426	2
AACGCCA	35	6.2462113E-6	38.571426	15
GTTCACG	35	6.2462113E-6	38.571426	1
ACGGCTG	650	0.0	38.423073	8
TCGTAAG	65	9.094947E-12	38.07692	1
TCGCTAC	30	1.1396512E-4	37.499996	41
CTTTCGT	30	1.1396512E-4	37.499996	15
CAATACG	30	1.1396512E-4	37.499996	32